PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo15G0040500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HB-other

Protein Properties

Length: 301aa MW: 33576.2 Da PI: 5.7591

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo15G0040500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.6e-21	16	71	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++l+L+ rq+k+WFqNrR+++k Spipo15G0040500 16 KKRYHRHTPKQIQTLEAMFKECPHPDEKQRMQLSRELSLEPRQIKFWFQNRRTQMK 71 678899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-22	3	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-20	6	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.929	13	73	IPR001356	Homeobox domain
SMART	SM00389	5.2E-19	14	77	IPR001356	Homeobox domain
CDD	cd00086	2.21E-19	16	74	No hit	No description
Pfam	PF00046	1.3E-18	16	71	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	13.087	203	254	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDSGEDPDTP DAQRRKKRYH RHTPKQIQTL EAMFKECPHP DEKQRMQLSR ELSLEPRQIK 60 FWFQNRRTQM KVQNERADNC SLRAENERIR CENIAIKEAL RNIICPTCGG PPATEDSFFD 120 EEKLRMENAR LKEELDRVSS VASKYLGRPI SQLPSIQPIP ASSLDLSVGG FSSPSLGPSL 180 DLDLLPGNLP SVPPLPFPPA GLSEVEKSLM ADVAADAMGE LIRLVQTDEP LWMKSGSDGR 240 ERLNLESYDR LFPRSGNQLK SPVIHSEASR ASCGVMMGAT ALVDMFMDSV NPSPSGYHLM 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008789232.1	1e-158	homeobox-leucine zipper protein ROC8-like
Swissprot	Q69T58	1e-125	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A1D1Y0W3	1e-180	A0A1D1Y0W3_9ARAE; Homeobox-leucine zipper protein ROC8
STRING	XP_008789231.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	5e-92	homeodomain GLABROUS 11

Link Out ? help Back to Top
Phytozome	Spipo15G0040500