PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0052800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 332aa    MW: 36203.7 Da    PI: 5.0304
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0052800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-08344338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                     +r C+ ++e ++ lfC+ ++ +lC +C  + H g       H+
  Spipo12G0052800  3 ARECDSCKESPALLFCRADSAFLCGTCDAKVH-GankfasrHE 44
                     579***************************99.4466666676 PP
2zf-B_box24.36.4e-084688339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      ++C+ +e+ ++   C+ +  +lC  C   +H+       H++
  Spipo12G0052800 46 VWMCEVCEQAPAAVTCKADAAMLCVACDADIHSAnplarrHER 88
                     689*****************************65777777775 PP
3CCT69.49.1e-24262305144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Spipo12G0052800 262 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 305
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
SMARTSM003368.9E-15148IPR000315B-box-type zinc finger
PfamPF006433.2E-7445IPR000315B-box-type zinc finger
CDDcd000212.99E-9648No hitNo description
PROSITE profilePS5011910.4524491IPR000315B-box-type zinc finger
PfamPF006433.3E-64690IPR000315B-box-type zinc finger
CDDcd000212.79E-84791No hitNo description
SMARTSM003364.4E-94991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.876262304IPR010402CCT domain
PfamPF062039.4E-18262304IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAARECDSCK ESPALLFCRA DSAFLCGTCD AKVHGANKFA SRHERVWMCE VCEQAPAAVT  60
CKADAAMLCV ACDADIHSAN PLARRHERFP VVPFYDSPAA ATGTLKFTNG PDLLKPSDDD  120
DDCRGNETEP SWVLPDPYPV KNDHLQKIAA EVPELKTVEY FFSDVDPFLD LDYASSVDPR  180
YDQTDSVVPV QAKAAAVASP VPALIATDGL VDFDYCRPKP SCGGYSISSS DAGVVPDASA  240
MADITYPYGR TNGPPPAGEP DREARLMRYR EKRKSRRFEK TIRYASRKAY AETRPRIKGR  300
FAKRTENGGE VIYGAAADLM VDSEYGVVPS F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789696.11e-131zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T93e-93COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2H3XWR61e-130A0A2H3XWR6_PHODC; zinc finger protein CONSTANS-LIKE 4
STRINGXP_008789696.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-89CONSTANS-like 4