PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0020000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 420aa    MW: 45980.7 Da    PI: 5.2025
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0020000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06344439
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     + C+ +++++   +C+++  +lC +C  + H+       H++
  Spipo12G0020000  3 QSCDFCGDQRPMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                     57*****************************65677777765 PP
2zf-B_box18.34.9e-064688440
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ +++++++  C d +  lC++C  + H +      H+++
  Spipo12G0020000 46 LLCDGCSSQPAIVRCIDEKASLCHNCDWNRHGRscptsgHKRQ 88
                     57*****************************558888889876 PP
3CCT614e-21362405144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Re a++RY+eK+k RkFeKkirYesRKa+A+ R RvKGrFvk+ 
  Spipo12G0020000 362 RETAVKRYQEKKKARKFEKKIRYESRKARADVRRRVKGRFVKAG 405
                      99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.0E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
CDDcd000215.92E-6547No hitNo description
CDDcd000210.002344790No hitNo description
SMARTSM003360.344890IPR000315B-box-type zinc finger
PfamPF062037.0E-16362404IPR010402CCT domain
PROSITE profilePS5101715.15362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGQSCDFCGD QRPMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCDG CSSQPAIVRC  60
IDEKASLCHN CDWNRHGRSC PTSGHKRQAI SCYSGCPSAS ELSKNWSFLL DIPPTEDSHC  120
EQGLGLMRIE EESVSKFMCP PGNSSTGEQA SASNMDDIGN ADRLNSWSGP SAVDAFPSSG  180
NQPAGSVDST EPKVLCDMGT DGFGMCENDE FYDEFSVEDV DLNFDNYNEF FGTSRNHSEH  240
LFDDAEIDSM FDLKNPSSAN ENHLDEFPAE ACPADQDGKI QPASSNVVST DSVKTNPKNR  300
SPKLCFPARH GHSSLSLSFS GLTGESSAGD YQDCGVSPTL LMGEPPWCPS GPGNPAFTTA  360
NRETAVKRYQ EKKKARKFEK KIRYESRKAR ADVRRRVKGR FVKAGEAYDY DPLCQTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803173.11e-175zinc finger protein CONSTANS-LIKE 10 isoform X2
TrEMBLA0A1D1Z5S90.0A0A1D1Z5S9_9ARAE; Zinc finger protein CONSTANS-LIKE 9
STRINGXP_008803173.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-89CONSTANS-like 9