PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g057870.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 170aa MW: 19108.8 Da PI: 9.208

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g057870.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.2e-27	62	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +++ r gCka++ vkke++gkw v+kl++eHnHel+ Sopim09g057870.0.1 62 YYSTYATHLGFIMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--NGKKKCRAIREGCKAMIIVKKEQSGKWLVAKLVKEHNHELV 148 8***************************************9988..888888899****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-25	62	148	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MVQTSSPKEF TTNQDNATDD VGIVETSTEK EFTPNGLEVE GRSNMEPYVG MEFESEEAAK 60 AYYSTYATHL GFIMRVDAFR RSMRNGELVW RRLVCNKEGF SKSRQSQNGK KKCRAIREGC 120 KAMIIVKKEQ SGKWLVAKLV KEHNHELVVK PVNTPKGAIL CQTPVIQGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010326272.1	1e-122	protein FAR1-RELATED SEQUENCE 1 isoform X2
Refseq	XP_015086379.1	1e-122	protein FAR1-RELATED SEQUENCE 1 isoform X5
Refseq	XP_015086380.1	1e-122	protein FAR1-RELATED SEQUENCE 1 isoform X6
Swissprot	Q9SZL8	2e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q7I445	1e-114	A0A3Q7I445_SOLLC; Uncharacterized protein
STRING	Solyc09g057870.2.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-50	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]