PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g076330.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 71aa MW: 8220.45 Da PI: 9.6788

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g076330.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.9	2.8e-12	19	64	1	46
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 kfY +YA++ Fsvrk++ ++s+++++i+ ++fvCskeg+r ++ + Sopim08g076330.0.1 19 KFYLDYAHRNSFSVRKNRISRSRKDKSIIGQEFVCSKEGFRLKKCN 64 6***************************************988754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-10	19	63	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MNAVPYIVME FQSLDTGFKF YLDYAHRNSF SVRKNRISRS RKDKSIIGQE FVCSKEGFRL 60 KKCNQACNCD *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009593	1e-108	AP009593.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence.
GenBank	HG975520	1e-108	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068484.1	1e-31	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025884696.1	3e-33	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_025884722.1	2e-32	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025884850.1	1e-31	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025888960.1	4e-31	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7HR27	1e-41	A0A3Q7HR27_SOLLC; Uncharacterized protein
STRING	Solyc08g076330.1.1	1e-45	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-12	FAR1 family protein