PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g006980.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 376aa MW: 42768 Da PI: 8.7075

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g006980.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	152	3.8e-47	105	245	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec...eaesssssasns 85 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ aik+l +++ +++ ++ +++sss +++++ Sopim04g006980.0.1 105 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKDLSENTPQKEysdgNKIvinSNNSSSYEGKSD 195 79************************************************************333333333233455555555555555 PP TCP 86 ssgkaaksaa.kskksqksaasalnlak.esrakarararertrekmrik 133 s ++++++ ++ ++k++ ++n++k esr+karararert+ekm+ik Sopim04g006980.0.1 196 SFMSECEENSiNELGKDKEKIMQNNPHKrESREKARARARERTKEKMMIK 245 55588888876666666666666788889****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-44	105	243	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.882	107	165	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.105	224	241	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MFPSSNNHDT FSYTSKTYLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI 60 LPQDHHVKEG NLTHLSSETS KEEMSIEAKP SSKKRSLSTT PRKRTGKKDR HSKICTAQGV 120 RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI 180 VINSNNSSSY EGKSDSFMSE CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE 240 KMMIKGLEKG NPSNMFDQLG SSRSNSGFLD QDSNNNSYNT SVNQEKGSPH EANSQSLEHH 300 FPIQNYLGGA SNSSTIDVGN CFMSFHGNWE INYAPMKSTN YSTTFAGNPS SIYLAQQYQT 360 LDQEKNLSSK HHRLE*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MFPSSNNHDT FSYTSKTYLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI  60
LPQDHHVKEG NLTHLSSETS KEEMSIEAKP SSKKRSLSTT PRKRTGKKDR HSKICTAQGV  120
RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI  180
VINSNNSSSY EGKSDSFMSE CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE  240
KMMIKGLEKG NPSNMFDQLG SSRSNSGFLD QDSNNNSYNT SVNQEKGSPH EANSQSLEHH  300
FPIQNYLGGA SNSSTIDVGN CFMSFHGNWE INYAPMKSTN YSTTFAGNPS SIYLAQQYQT  360
LDQEKNLSSK HHRLE*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234598.1	0.0	TCP transcription factor 22
TrEMBL	A0A3Q7GNB6	0.0	A0A3Q7GNB6_SOLLC; Uncharacterized protein
STRING	Solyc04g006980.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	8e-31	TCP domain protein 12