PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g111580.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 510aa    MW: 57322.7 Da    PI: 5.1242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g111580.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12178199526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+++++tG Ck+G++CkF+H+
  Sopim03g111580.0.1 178 DCPYYMKTGMCKFGSNCKFNHP 199
                         7********************8 PP
2zf-CCCH31.33.5e-10223247327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         + +C++++ +G CkyG  CkF+H++
  Sopim03g111580.0.1 223 QIECKYYLTSGGCKYGKACKFNHSR 247
                         568********************95 PP
3zf-CCCH41.52.2e-13267292126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C++++rtG CkyG++C+F+H+
  Sopim03g111580.0.1 267 PGERECPYYMRTGSCKYGSNCRFHHP 292
                         5789*********************9 PP
4zf-CCCH28.92e-09403429127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f ++G Cky ++CkF+H++
  Sopim03g111580.0.1 403 PGQPECSYFIKFGDCKYRSSCKFHHPK 429
                         5789*********************96 PP
5zf-CCCH37.54.1e-12451475327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +  C+f++r+G+CkyG+ CkF H++
  Sopim03g111580.0.1 451 QTVCSFYSRYGICKYGPACKFDHPE 475
                         678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-6173200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723173201IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9178199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5179198IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4220247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474220248IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7224247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5226248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483266294IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7266293IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11268292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7269293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5272291IPR000571Zinc finger, CCCH-type
SMARTSM003560.021402429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657402430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5406431IPR000571Zinc finger, CCCH-type
PfamPF146080.53408428No hitNo description
SMARTSM003561.7E-6448475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131448476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6449476IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9451475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4453475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEAIEQHQNH NQLPDQTEEF GIQSQNSETL LLSSDLNFQN PDQNQPKADE NDDDDEMAMQ  60
AICEELKNLV LSQVLDEDGR NKDLHRLDRE ESGKLKEKLE DELGNVEGND DGWGYVGEYG  120
YDQYDEDGDE NRSGSRNDNE IDGENENGYE GDSKEAGFNA NRINKRKINY PLRPDAQDCP  180
YYMKTGMCKF GSNCKFNHPS RRRIQGTKEK GKQREDSQER PGQIECKYYL TSGGCKYGKA  240
CKFNHSREKG AISPIVEFNF LGLPIRPGER ECPYYMRTGS CKYGSNCRFH HPDPTTVAGA  300
DLSSGHNNTG AVPVQAASHS SASSWSPPRA LNDTAPYVPN MYPPTQGTAS PNIEWNGYQA  360
PAYPTSEKRL PTPPAYAMNN PAKTNFYPLS QQSQQVEEYP ERPGQPECSY FIKFGDCKYR  420
SSCKFHHPKS RISKANSSTL NDKGLPLRPD QTVCSFYSRY GICKYGPACK FDHPENYVGS  480
ASAAESGFDQ REQSQMSLGW QGQHLEVDH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236314.10.0zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM41e-119C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0V0IH080.0A0A0V0IH08_SOLCH; Putative zinc finger CCCH domain-containing protein 43-like
STRINGSolyc03g111580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-116C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]