PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g024190.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 448aa MW: 50682.2 Da PI: 7.7756

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g024190.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	47.5	3.6e-15	353	400	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ + ++++F ++++dAAk+L v+ +LK+iC +y I RWP k +++ Sopen11g024190.1 353 ITRKIMEQHFGMTLQDAAKNLPVSRATLKQICKEYEITRWPNYKTRKV 400 88999************************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57756	2.09E-7	45	90	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	4.5E-6	49	89	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	0.1	54	70	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	2.3	72	88	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51519	11.092	334	421	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-16	353	400	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MNCDPSTSLD VCFRVLLREE QRLVTKYAFK KENDVTVAFA AQGKGKGRDM SRTQCYSCKE 60 YWHIASNCSK KFCNYCKQQG YIIKECPTRP HNRTVNAFQA GINGSTIDNS SSGQVLTPEM 120 VQQMIVSAFS ALGLQGVFLN QHKYAQDLLS LAGLQDFSSV DTLLELNMKY HQEEGDILPD 180 PTMFRQLVGS LNYLTITRPD ISFVVQQVSQ FMQAPRHLHL VAVHRIIRYL LGTSTRGLFF 240 PSGSPIRLIA LVILTGRDVL ILIVQSLKID RTMEVDLLLP HPIEEAVINS GKVNLDVAHD 300 DHIEDTLEIM QLDSHFEQPN IEIYSAGNAM TNNNKIHLHK KNIIQRIEKD YGITRKIMEQ 360 HFGMTLQDAA KNLPVSRATL KQICKEYEIT RWPNYKTRKV NVHVSQGVSF QGAEPYVVDQ 420 QCSALSQEKG IDYLGHKISP AQENLVIV

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MNCDPSTSLD VCFRVLLREE QRLVTKYAFK KENDVTVAFA AQGKGKGRDM SRTQCYSCKE  60
YWHIASNCSK KFCNYCKQQG YIIKECPTRP HNRTVNAFQA GINGSTIDNS SSGQVLTPEM  120
VQQMIVSAFS ALGLQGVFLN QHKYAQDLLS LAGLQDFSSV DTLLELNMKY HQEEGDILPD  180
PTMFRQLVGS LNYLTITRPD ISFVVQQVSQ FMQAPRHLHL VAVHRIIRYL LGTSTRGLFF  240
PSGSPIRLIA LVILTGRDVL ILIVQSLKID RTMEVDLLLP HPIEEAVINS GKVNLDVAHD  300
DHIEDTLEIM QLDSHFEQPN IEIYSAGNAM TNNNKIHLHK KNIIQRIEKD YGITRKIMEQ  360
HFGMTLQDAA KNLPVSRATL KQICKEYEIT RWPNYKTRKV NVHVSQGVSF QGAEPYVVDQ  420
QCSALSQEKG IDYLGHKISP AQENLVIV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	5e-10	Nin-like family protein