PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g030980.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 1009aa MW: 111346 Da PI: 5.9531

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g030980.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	609	660	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Sopen08g030980.1 609 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 660 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	597	680	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	612	660	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-23	913	1000	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-25	914	995	No hit	No description
SMART	SM00666	1.8E-22	914	996	IPR000270	PB1 domain
PROSITE profile	PS51745	23.655	914	996	IPR000270	PB1 domain
Pfam	PF00564	6.7E-18	915	995	IPR000270	PB1 domain
CDD	cd06407	7.20E-37	915	995	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MSEPEEEMNF IFRSKQKDFA AHPPPATAQQ QQQHAVGENH RDSLMMDLDL DLDASWSFDQ 60 IFAAAASASN PMSPFLVSAA SEQPCSPLWA FSDENEDKPN GNALSTGSLR LSNYPRFVTY 120 ANEHEAAPET VSVTDDKKRI PPPIKGLAPL DYLDSSCIIK ERMTQALRYF KESTGERVLA 180 QVWAPVKNGG RYVLTTSGQP FVLDPDCNGL HQYRMVSLMY MFSVDGETDG VLGLPGRVYR 240 KKLPEWTPNV QYYSSKEFPR LNHALDYNVR GTLALPVFEP SGQSCVGVLE LIMTSQKINY 300 APEVDKVCKA LEAVNLKSSE ILDCPNHQIC NEGRQNALVE ILEIITAVCE TYKLPLAQTW 360 VPCRHRSVLA DGGGFKKSCS SFDGSCMGQV CMSTTDVAFY VVDAHMWGFR EACAEHHLQK 420 GQGVAGRAYA SQKSCFCEDI GKFCKTEYPL VHYARLFGLS RCFAICLRST HTGNDDYILE 480 FFLPPNDGDY TDQLALLNSL LLTMKQHFRS LRVASGEELE HHWGSVEIIK ASTEEKLGSR 540 FDSVPTTKSL PQSASVANGR THPDLMEEQQ SPVAKGAEGV NGTAEAHNHA SVPQNKQTGK 600 KSERKRGKAE KTISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV 660 NRSLSKLKRV IESVQGADGT FSLTSLAPNS LPVAVGSISW PAGINGSPCK ASEYQEEKNE 720 FSNHGTPGSH EEAEPTDQML GSRIIGNEEL SPKLNGFVRE GSHRSRTGSF SREESTGTPT 780 SHGSCQGSPS PANESSPQNE LVNSPTQESV MKVEGSLEPA RQTTGELNLS TAFLMPGLFI 840 PEHTHQQFRG MLVEDAGSSH DLRNLCPTGE TMFDERVPEY SWTNPPCSNG IATNQVPLPV 900 EKMPQFSSRP EVTSVTIKAT YREDIIRFRL CLNSGIYKLK EEVSKRLKLE MGTFDIKYLD 960 DDHEWVLIAC DADLQECIDI SSSSGSNVVR LLVHDIMPNL GSSCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MSEPEEEMNF IFRSKQKDFA AHPPPATAQQ QQQHAVGENH RDSLMMDLDL DLDASWSFDQ  60
IFAAAASASN PMSPFLVSAA SEQPCSPLWA FSDENEDKPN GNALSTGSLR LSNYPRFVTY  120
ANEHEAAPET VSVTDDKKRI PPPIKGLAPL DYLDSSCIIK ERMTQALRYF KESTGERVLA  180
QVWAPVKNGG RYVLTTSGQP FVLDPDCNGL HQYRMVSLMY MFSVDGETDG VLGLPGRVYR  240
KKLPEWTPNV QYYSSKEFPR LNHALDYNVR GTLALPVFEP SGQSCVGVLE LIMTSQKINY  300
APEVDKVCKA LEAVNLKSSE ILDCPNHQIC NEGRQNALVE ILEIITAVCE TYKLPLAQTW  360
VPCRHRSVLA DGGGFKKSCS SFDGSCMGQV CMSTTDVAFY VVDAHMWGFR EACAEHHLQK  420
GQGVAGRAYA SQKSCFCEDI GKFCKTEYPL VHYARLFGLS RCFAICLRST HTGNDDYILE  480
FFLPPNDGDY TDQLALLNSL LLTMKQHFRS LRVASGEELE HHWGSVEIIK ASTEEKLGSR  540
FDSVPTTKSL PQSASVANGR THPDLMEEQQ SPVAKGAEGV NGTAEAHNHA SVPQNKQTGK  600
KSERKRGKAE KTISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV  660
NRSLSKLKRV IESVQGADGT FSLTSLAPNS LPVAVGSISW PAGINGSPCK ASEYQEEKNE  720
FSNHGTPGSH EEAEPTDQML GSRIIGNEEL SPKLNGFVRE GSHRSRTGSF SREESTGTPT  780
SHGSCQGSPS PANESSPQNE LVNSPTQESV MKVEGSLEPA RQTTGELNLS TAFLMPGLFI  840
PEHTHQQFRG MLVEDAGSSH DLRNLCPTGE TMFDERVPEY SWTNPPCSNG IATNQVPLPV  900
EKMPQFSSRP EVTSVTIKAT YREDIIRFRL CLNSGIYKLK EEVSKRLKLE MGTFDIKYLD  960
DDHEWVLIAC DADLQECIDI SSSSGSNVVR LLVHDIMPNL GSSCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085023.1	0.0	protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1AWK0	0.0	M1AWK0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]