PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g017790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Nin-like
Protein Properties Length: 346aa    MW: 38847.3 Da    PI: 5.0174
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g017790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK61.71.2e-19255305252
            RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       +k ++++d + y +l+i++A  +L++c+Tv+Kr CR+ G++RWP+Rki+s+
  Sopen08g017790.1 255 TKMMNVKDFEDYLHLSIQEAGIKLNLCPTVMKRVCRRDGLRRWPSRKINSI 305
                       688999*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.959245325IPR003035RWP-RK domain
PfamPF020423.0E-17258305IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDNFDTSIVP YHDPFDDNIL TGLNFSLFDD ENPTIDGDIN YQVAINLNPT IVGVDNNNHQ  60
GPPSNENTTN LNSSLSFLDY DPYLLEISYD SGDGFVGGST NPEGEVPGNN NSQILREIIH  120
DNGMILSKIG IFGTIGRISH AIVEKSTMDD HMSSDTIDFS NDSISKVKEF LVQYFEGCKK  180
DGYIVLEDTL SEFYQTLSVN SGVRTNDINK LLQLSTTNLH HNVQTEQQGM ANENEGTSSG  240
VNRGKISLSE QRRRTKMMNV KDFEDYLHLS IQEAGIKLNL CPTVMKRVCR RDGLRRWPSR  300
KINSIKRKIS KRQESLNSIH AGERKSAKAD IMKLEKELAA IYNDLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084785.20.0uncharacterized protein LOC107028266
TrEMBLA0A3Q7HPR40.0A0A3Q7HPR4_SOLLC; Uncharacterized protein
STRINGSolyc08g062200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35052027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.17e-08Nin-like family protein