PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g004760.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 952aa MW: 105202 Da PI: 5.1326

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g004760.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.6e-28	556	607	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++k+AA+++gvc+T+LKriCRqyGI+RWP+Rki+++ Sopen08g004760.1 556 AEKHVSLSVLQQYFSGSLKNAAQSIGVCPTTLKRICRQYGISRWPSRKISKV 607 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	539	627	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-24	560	607	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.81E-19	844	937	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.9E-22	849	931	No hit	No description
PROSITE profile	PS51745	18.443	852	934	IPR000270	PB1 domain
SMART	SM00666	9.8E-19	852	934	IPR000270	PB1 domain
Pfam	PF00564	4.0E-15	853	933	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 952 aa Download sequence Send to blast
MENGIGFWAS PRCSYIDDNV MEIMNLDTCA GIEQIFASYP TFSPINPMSI DYAPFEEQNT 60 ETFPCEGVNL MFQQNDDQFC FVDSSEEADL VVETGTGKNS SKQNYVTHIV EKCVIPKSPC 120 QSLAERMLKA LELFKKSSGE GILAQVWVPM KSGDQYILST YEQPFLLDQV LSGYREVSRK 180 FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN VMYYKEAEYL RVQYAVDHEV RGSIALPILE 240 DEGYDTLCCA VLELVTVKER PNFDLETSHV CQALQAVNLR STTPPQFSSQ SLSKNQRAVL 300 AEVKDVLRAV CHAHRLPLAL TWIPRSCRGG GDEIRVHARE SIASLDERSV LCVENTACYV 360 SDKEMQGFLH ACMGHDLEEG QGIVGKSLQS NHPFFYPDVK EYHINEYPLV HHARKFGLNA 420 AVAIRLRSIL TGDDDYVLEF FLPVDMEGST EQQLLLNNLS RTMQRICRSL RTLSDAELIG 480 EGGEKCGLQS ESVLNLPPFD LSRKSSQQSL LDSTLDLSKA PIDVCDSDRA GIEANISHKQ 540 TPSVSRKRTE KKRSAAEKHV SLSVLQQYFS GSLKNAAQSI GVCPTTLKRI CRQYGISRWP 600 SRKISKVNRS LVKIRTVLQS VQGIEGGLKF DTVTGGIVAA TSILQDFDSQ KSMLSPCKDV 660 SIKSSEFLFQ DATSALQTDN HDPLVKMEED LNVDGNQLPE SSHFSPSSFR VGDKPNSSLS 720 GVCHGSKLAA LDRRSSLPAN PDTMPCTSSG NVSLDSFHSC GLNTSNLKLD NSGCRFISLC 780 PDSMAKTDDV EEKMKGSIEV DGDDGVMEHN KVSSSGVTDL SNTSRSTMNG SSSSSHSSGE 840 RKHTTAEDGG SQITVKASYM KDKIRFKFES SAGCFQLYEE VAKRFKLQIG TFQLHYLDDE 900 EEWVMLVNDA DLNECLEILD ILGTRNVKFL VQDVSGTVGS SGSSNCFLTN GS

Sequence ? help Back to Top

Protein Sequence Length: 952 aa Download sequence Send to blast

MENGIGFWAS PRCSYIDDNV MEIMNLDTCA GIEQIFASYP TFSPINPMSI DYAPFEEQNT  60
ETFPCEGVNL MFQQNDDQFC FVDSSEEADL VVETGTGKNS SKQNYVTHIV EKCVIPKSPC  120
QSLAERMLKA LELFKKSSGE GILAQVWVPM KSGDQYILST YEQPFLLDQV LSGYREVSRK  180
FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN VMYYKEAEYL RVQYAVDHEV RGSIALPILE  240
DEGYDTLCCA VLELVTVKER PNFDLETSHV CQALQAVNLR STTPPQFSSQ SLSKNQRAVL  300
AEVKDVLRAV CHAHRLPLAL TWIPRSCRGG GDEIRVHARE SIASLDERSV LCVENTACYV  360
SDKEMQGFLH ACMGHDLEEG QGIVGKSLQS NHPFFYPDVK EYHINEYPLV HHARKFGLNA  420
AVAIRLRSIL TGDDDYVLEF FLPVDMEGST EQQLLLNNLS RTMQRICRSL RTLSDAELIG  480
EGGEKCGLQS ESVLNLPPFD LSRKSSQQSL LDSTLDLSKA PIDVCDSDRA GIEANISHKQ  540
TPSVSRKRTE KKRSAAEKHV SLSVLQQYFS GSLKNAAQSI GVCPTTLKRI CRQYGISRWP  600
SRKISKVNRS LVKIRTVLQS VQGIEGGLKF DTVTGGIVAA TSILQDFDSQ KSMLSPCKDV  660
SIKSSEFLFQ DATSALQTDN HDPLVKMEED LNVDGNQLPE SSHFSPSSFR VGDKPNSSLS  720
GVCHGSKLAA LDRRSSLPAN PDTMPCTSSG NVSLDSFHSC GLNTSNLKLD NSGCRFISLC  780
PDSMAKTDDV EEKMKGSIEV DGDDGVMEHN KVSSSGVTDL SNTSRSTMNG SSSSSHSSGE  840
RKHTTAEDGG SQITVKASYM KDKIRFKFES SAGCFQLYEE VAKRFKLQIG TFQLHYLDDE  900
EEWVMLVNDA DLNECLEILD ILGTRNVKFL VQDVSGTVGS SGSSNCFLTN GS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085099.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A3Q7HLJ0	0.0	A0A3Q7HLJ0_SOLLC; Uncharacterized protein
STRING	Solyc08g013900.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]