PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g004270.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 1008aa MW: 109912 Da PI: 6.0275

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g004270.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Sopen08g004270.1 601 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.643	589	672	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.52E-20	912	996	No hit	No description
PROSITE profile	PS51745	21.799	913	995	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-21	913	994	No hit	No description
SMART	SM00666	1.4E-23	913	995	IPR000270	PB1 domain
CDD	cd06407	8.01E-31	914	994	No hit	No description
Pfam	PF00564	4.1E-17	914	994	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MSEPGGGMTQ NHLPKSKELT PATVTERESM MMDLDFDIDA SWSFDQIFAA AAAVSSNPAS 60 PFLPCSPLWA FPDDNDEKPA GNGLSGALRI SGHPRLVAYT GDLEATTETV SVNTDKGRLT 120 SPISGLVPGD NPEGSCIIKE RMTQALRYLK ESTGERVLAQ VWAPVKEAGR SVLTTSGQPF 180 VLDPECNGLH QYRTVSLMYM FAADGETDGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL 240 DHALNFNVRG TLALPVFEPS GRSCVGVLEL IMTSQKINYA AEVDKVCKAL EAVNLKSSDI 300 LDHPNTQVYV MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG 360 GGLRKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR 420 KSCYCENITQ FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNFGDYSD 480 QQALLNSLLL TMKQHFRSLS IASGEELEHD WGSVEIIQAS MEEKIDAKPE SVPTAKTSPQ 540 LTSLPNGWVH LDPVGEQQSA VGSNVSKGAR STSGTGEAPN NVSNSDNKTS GKKSERKRGK 600 AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK 660 CVIESVQGAE GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPEEKNEFF 720 HHGTPESHIE AEPSNQMLGG RVARKEEFTP MQNGFLHAEG TRKSRTGSVS REESAGTPTS 780 HGSCQGSPCA GNGFSPQNEL VNSPAHELCV KVGGSLEAAR QTTAEINLSS AFLMPQPIIP 840 KHTQEPFGGM LVEDAGSSHD LRNLCSPRDA LVDERVPDYN LTNPPFSDAI AKDPVYVPPD 900 TIQQYSAWPE VTSVTIKATY KEDIIRFRLC LNSGIVKLKE EVAKRLKLEL GTFYIKYLDD 960 DLEFVPISCD ADLQECVDIS RSSGSSIVRL LIHDIMYNLG SSCESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MSEPGGGMTQ NHLPKSKELT PATVTERESM MMDLDFDIDA SWSFDQIFAA AAAVSSNPAS  60
PFLPCSPLWA FPDDNDEKPA GNGLSGALRI SGHPRLVAYT GDLEATTETV SVNTDKGRLT  120
SPISGLVPGD NPEGSCIIKE RMTQALRYLK ESTGERVLAQ VWAPVKEAGR SVLTTSGQPF  180
VLDPECNGLH QYRTVSLMYM FAADGETDGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL  240
DHALNFNVRG TLALPVFEPS GRSCVGVLEL IMTSQKINYA AEVDKVCKAL EAVNLKSSDI  300
LDHPNTQVYV MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG  360
GGLRKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR  420
KSCYCENITQ FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNFGDYSD  480
QQALLNSLLL TMKQHFRSLS IASGEELEHD WGSVEIIQAS MEEKIDAKPE SVPTAKTSPQ  540
LTSLPNGWVH LDPVGEQQSA VGSNVSKGAR STSGTGEAPN NVSNSDNKTS GKKSERKRGK  600
AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK  660
CVIESVQGAE GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPEEKNEFF  720
HHGTPESHIE AEPSNQMLGG RVARKEEFTP MQNGFLHAEG TRKSRTGSVS REESAGTPTS  780
HGSCQGSPCA GNGFSPQNEL VNSPAHELCV KVGGSLEAAR QTTAEINLSS AFLMPQPIIP  840
KHTQEPFGGM LVEDAGSSHD LRNLCSPRDA LVDERVPDYN LTNPPFSDAI AKDPVYVPPD  900
TIQQYSAWPE VTSVTIKATY KEDIIRFRLC LNSGIVKLKE EVAKRLKLEL GTFYIKYLDD  960
DLEFVPISCD ADLQECVDIS RSSGSSIVRL LIHDIMYNLG SSCESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085387.1	0.0	protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A3Q7HL32	0.0	A0A3Q7HL32_SOLLC; Uncharacterized protein
STRING	Solyc08g008410.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]