PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g003530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 381aa    MW: 41424.6 Da    PI: 8.231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g003530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-124469227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +t++C+f++rtG C yG++C+++H+p
  Sopen06g003530.1 44 GTSNCSFYMRTGSCGYGAKCRYNHPP 69
                      799*********************97 PP
2zf-CCCH33.66.7e-1190114327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++++rt tCk+G++CkF+H++
  Sopen06g003530.1  90 EPTCQYYLRTATCKFGASCKFHHPR 114
                       689********************96 PP
3zf-CCCH37.44.3e-12135159226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++C+++++tG+Ck+G +CkF+H+
  Sopen06g003530.1 135 EERECSYYLKTGQCKFGITCKFHHP 159
                       5799********************9 PP
4zf-CCCH41.52.3e-13290315126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+++++tG Ck+G++CkF+H+
  Sopen06g003530.1 290 PGQPVCQYYMKTGDCKFGSSCKFHHP 315
                       5789*********************8 PP
5zf-CCCH375.8e-12337362227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +  +C+f+++ G+Ck+G++CkF H++
  Sopen06g003530.1 337 GVQPCSFYMQRGFCKFGGTCKFDHPM 362
                       6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9574270IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-64269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-64370IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-104469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-64568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46987115IPR000571Zinc finger, CCCH-type
SMARTSM003560.001487114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-590115IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-890114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-493114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413134161IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4139159IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173289317IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10291315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6294315IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502335363IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6337363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4339360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MELYGGSHSD RQSEWVPVGP ETGLEESMRR LGLWRREPYP ERSGTSNCSF YMRTGSCGYG  60
AKCRYNHPPD RSSVGAVLLE STEYPERIGE PTCQYYLRTA TCKFGASCKF HHPRNLGGSL  120
SNISLNVYGY PLHPEERECS YYLKTGQCKF GITCKFHHPD HAEVSAPATA RPFYPTSPSL  180
PAPPEEYNST STSSRVAGPQ LLPGPYVPGT YGPVLLHPGV VTIQNWSTYS GPVSPALSPG  240
AQPSAGMASI YGMPQLASST AAFAAPYSPL HSAAGPSSSA LRENRFPERP GQPVCQYYMK  300
TGDCKFGSSC KFHHPADWIA SKIDCTFSPL GLPLRPGVQP CSFYMQRGFC KFGGTCKFDH  360
PMGTGRYSPS ASSLPDIPNA P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-178HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078250.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-158C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3Q7HJP50.0A0A3Q7HJP5_SOLLC; Uncharacterized protein
STRINGSolyc06g008740.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-150C3H family protein