PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g036420.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 692aa MW: 80525.6 Da PI: 7.6698

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g036420.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1.1e-21	85	168	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn Y++evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH+l Sopen03g036420.1 85 NYYNCYSREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHSL 168 69***************************************9988.....99*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-19	85	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-25	287	380	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	574	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MEETSLDSEQ NVAGQGSGRF QEIESDELDD QNSEKIESDE LFVQNGVQIE ANGLDDQNCV 60 TEDGQKEFVA PAVGMEFESY DDAYNYYNCY SREVGFRVRV KNSWFKRNSR EKYGAVLCCS 120 SQGFKRIKDV NRLRKETRTG CPAMMRMRMV DSKRWRVLEV TLEHNHSLGT KAYKSIMKTG 180 TGNKKKLDSN CNAEVQTIKL YRALVIDAGA TRNANFSARR CQTSSDCHDK LNLRKGDTQA 240 MYNYFCRMQL TNPNFFYLMD LNDEGQLRNV FWIDARSRAA YAYFVDVIYI DNSYLSNKYE 300 IPLVAFVGTN HHGQSMLLGC GLLAGETKAS YVWMFKAWLT CSLGRFPQTI ITERCKVLET 360 AIHEVFPRSL HRFALSHILR KVPEKLGGLR NYDVIRKALF KTIYEGLKPF DFEAAWRVMI 420 QRFGVGDHEW LCSLYNDRAK WAPVYLKDTF FAGMATARSN ETLTAFFDKY VHKQTPLKEF 480 LDKYELALQK KFKEEALADM ESRSSNPELK TRCSFELQLS KVYTREIFKR FQLEVEEMYS 540 CFSTTKLHVD GQVVIFLVKE RVLEEGNRRE IRDYEVLYNR EAAEVRCICS CFNFYGYLCR 600 HALCVLNFNG VEEIPSKYIL SRWKKDYKRL CALDVESSFT ESTEQVQWYS QLYRSALQVV 660 EEGVISLDHY KVALNAFEES LSRVHHIEEK TK

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MEETSLDSEQ NVAGQGSGRF QEIESDELDD QNSEKIESDE LFVQNGVQIE ANGLDDQNCV  60
TEDGQKEFVA PAVGMEFESY DDAYNYYNCY SREVGFRVRV KNSWFKRNSR EKYGAVLCCS  120
SQGFKRIKDV NRLRKETRTG CPAMMRMRMV DSKRWRVLEV TLEHNHSLGT KAYKSIMKTG  180
TGNKKKLDSN CNAEVQTIKL YRALVIDAGA TRNANFSARR CQTSSDCHDK LNLRKGDTQA  240
MYNYFCRMQL TNPNFFYLMD LNDEGQLRNV FWIDARSRAA YAYFVDVIYI DNSYLSNKYE  300
IPLVAFVGTN HHGQSMLLGC GLLAGETKAS YVWMFKAWLT CSLGRFPQTI ITERCKVLET  360
AIHEVFPRSL HRFALSHILR KVPEKLGGLR NYDVIRKALF KTIYEGLKPF DFEAAWRVMI  420
QRFGVGDHEW LCSLYNDRAK WAPVYLKDTF FAGMATARSN ETLTAFFDKY VHKQTPLKEF  480
LDKYELALQK KFKEEALADM ESRSSNPELK TRCSFELQLS KVYTREIFKR FQLEVEEMYS  540
CFSTTKLHVD GQVVIFLVKE RVLEEGNRRE IRDYEVLYNR EAAEVRCICS CFNFYGYLCR  600
HALCVLNFNG VEEIPSKYIL SRWKKDYKRL CALDVESSFT ESTEQVQWYS QLYRSALQVV  660
EEGVISLDHY KVALNAFEES LSRVHHIEEK TK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015071114.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A3Q7GI49	0.0	A0A3Q7GI49_SOLLC; Uncharacterized protein
STRING	XP_009620425.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]