PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g030700.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 510aa    MW: 57654 Da    PI: 5.2094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g030700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12178199526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+++++tG Ck+G++CkF+H+
  Sopen03g030700.1 178 DCPYYMKTGMCKFGSNCKFNHP 199
                       7********************8 PP
2zf-CCCH31.33.5e-10224248327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       + +C++++ +G CkyG  CkF+H++
  Sopen03g030700.1 224 QIECKYYLTSGGCKYGKACKFNHSR 248
                       568********************95 PP
3zf-CCCH41.62.1e-13269293226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++C++++rtG CkyG++C+F+H+
  Sopen03g030700.1 269 EERECPYYMRTGSCKYGSNCRFHHP 293
                       5799********************9 PP
4zf-CCCH28.92e-09404430127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f ++G Cky ++CkF+H++
  Sopen03g030700.1 404 PGQPECSYFIKFGDCKYRSSCKFHHPK 430
                       5789*********************96 PP
5zf-CCCH37.54.1e-12452476327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +  C+f++r+G+CkyG+ CkF H++
  Sopen03g030700.1 452 QTVCSFYSRYGICKYGPACKFDHPE 476
                       678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6173200IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723173201IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9178199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5179198IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474221249IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7225248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5226250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5227249IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6267294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.267267295IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11269293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5273292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657403431IPR000571Zinc finger, CCCH-type
SMARTSM003560.021403430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5407432IPR000571Zinc finger, CCCH-type
PfamPF146080.53409429No hitNo description
SMARTSM003561.7E-6449476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131449477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6450477IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9452476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4454476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEAIEQHQNH NQLPDQTEEF GIQSQNSETL LLSSDLNFQN PDQNQPKADE NDDDDEMAMQ  60
AICEELKNLV LSQVLDEDGR SKDLHRLDRE ESGKLKEKLE DELENVEGND DGWGYVGEYG  120
YHQYDEDGDE NRSGSRNDYE IDGENENGYE GDSKEAGFNA NRINKRKINY PLRPDAQDCP  180
YYMKTGMCKF GSNCKFNHPS RRRIQQGTKE KGKQREDSQE RPGQIECKYY LTSGGCKYGK  240
ACKFNHSREK GAISPIVEFN FLGLPIRPEE RECPYYMRTG SCKYGSNCRF HHPDPTTVAG  300
ADLSSGHNNT GAVPVQAASH SSASSWSPPR ALNDTAPYVP NMYPPTQGTA SPNTEWNGYQ  360
APAYPTSEKR LPTPPAFAMN NPAKTNFYPR SQQSQQVEEY PERPGQPECS YFIKFGDCKY  420
RSSCKFHHPK SRISKANSST LNDKGLPLRP DQTVCSFYSR YGICKYGPAC KFDHPENYVG  480
SASAAESGFD QREQSQMSLG WQGQHLEVDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070756.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-118C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0V0IH080.0A0A0V0IH08_SOLCH; Putative zinc finger CCCH domain-containing protein 43-like
STRINGSolyc03g111580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-114C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]