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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof013327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | CAMTA | ||||||||
Protein Properties | Length: 219aa MW: 25227.2 Da PI: 9.5969 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.4 | 1.6e-54 | 21 | 133 | 5 | 117 |
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLee 104 k+rwlk++e+++iL+n+e ++++++++++p+sgs++L+nr+++ryfr DG++w+kkk+gkt++E+he+LKv++v++l+cyYa++++nptfqrr+yw+L+ Sof013327 21 KTRWLKPQEVLKILQNHELFTISHKTPQKPQSGSWFLFNRRVLRYFRSDGFEWQKKKNGKTINEAHERLKVDNVDALNCYYARGDKNPTFQRRIYWMLDP 120 89************************************************************************************************** PP CG-1 105 elekivlvhylev 117 ++e+ivlvhy++v Sof013327 121 AYEHIVLVHYRDV 133 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.404 | 13 | 139 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.2E-64 | 16 | 134 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.5E-49 | 21 | 133 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MQQLQQQQQG LDIDKLQQVV KTRWLKPQEV LKILQNHELF TISHKTPQKP QSGSWFLFNR 60 RVLRYFRSDG FEWQKKKNGK TINEAHERLK VDNVDALNCY YARGDKNPTF QRRIYWMLDP 120 AYEHIVLVHY RDVLEGSISV SARNDSSTSN QNGSASRADV HSSPGWTSEL IVQCPNSCSP 180 GSCGXVSFRT SASESDWIQH KAALPKLKMQ LSLEEQGKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.9251 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456865.1 | 1e-140 | calmodulin-binding transcription activator 4 | ||||
Swissprot | Q9FYG2 | 5e-53 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | C5XGC6 | 1e-139 | C5XGC6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g044220.1 | 1e-139 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 4e-54 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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