PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof002833

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

CAMTA

Protein Properties

Length: 273aa MW: 30996.1 Da PI: 4.9715

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17318530	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-117898	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	151.8	1.6e-47	2	99	20	117
CG-1 20 nfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 n+e ++++++++++p+sgs++L+nr+++ryfr DG++w+kkk+gkt++E+he+LKv++v++l+cyYa++++nptfqrr+yw+L+ ++e+ivlvhy++v Sof002833 2 NHELFTISHKTPQKPQSGSWFLFNRRVLRYFRSDGFEWQKKKNGKTINEAHERLKVDNVDALNCYYARGDKNPTFQRRIYWMLDPAYEHIVLVHYRDV 99 8999*******************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	2.7E-49	1	100	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	66.921	1	105	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.6E-41	4	99	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
QNHELFTISH KTPQKPQSGS WFLFNRRVLR YFRSDGFEWQ KKKNGKTINE AHERLKVDNV 60 DALNCYYARG DKNPTFQRRI YWMLDPAYEH IVLVHYRDVL EGSISVSARN DSSTSNQNGS 120 ASRADVHSSP GWTSELIVQC PNSCSPGSAE EVSSRTSASE SDWIQHKAAL RKLKMQLSLE 180 DKEDCDVNAE EVPANNEPII LPGIQNEELD TSRNHDDIFD VLDFSEDRIN RTGTHPCPSA 240 IDVLKNSDTW LEEDQLEANL HSTCMTLAEN NGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9251	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456865.1	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	3e-46	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	C5XGC6	0.0	C5XGC6_SORBI; Uncharacterized protein
STRING	Sb03g044220.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-48	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]