PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

85122

Common Name

SELMODRAFT_85122

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 324aa MW: 34943.9 Da PI: 9.7516

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
85122	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.4e-29	86	170	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW k+e+ aLi++r++m++++r++ lk+plW+evs+k++e g++rs+k+Ckek+en+ k+ykk k+g+ +r++++s +++f ++ea 85122 86 RWLKEETSALIKIRNDMDRSFRDSPLKGPLWAEVSRKLAELGYQRSSKKCKEKFENVYKYYKKSKDGRAGRQDGKS--YRFFADMEA 170 8*******************************************************************866665..*****85 PP
2	trihelix	108.4	4.5e-34	231	316	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+++e +++++ k+plWee+s+ m+ g++rs+k+Ckekwen+nk+++k+k+++kkr +e+s+tcpyf+ql+a 85122 231 RWPKPEVLALIKLRSSIEGKFQETGPKGPLWEEISSGMSCMGYSRSAKRCKEKWENINKYFRKTKDSSKKR-PENSKTCPYFHQLDA 316 8*******************************************************************8.9999*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0027	83	145	IPR001005	SANT/Myb domain
Pfam	PF13837	1.5E-20	85	171	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-4	85	144	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.189	86	143	IPR017877	Myb-like domain
CDD	cd12203	2.27E-22	86	150	No hit	No description
SMART	SM00717	0.032	228	290	IPR001005	SANT/Myb domain
CDD	cd12203	5.85E-30	230	295	No hit	No description
Pfam	PF13837	1.8E-22	230	317	No hit	No description
PROSITE profile	PS50090	7.027	231	288	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MQQLGLARSS GDQEPDPGGV AGGDGNSVAP PPPPPPAAPP KINVSQPGGA APPGPPSLAQ 60 QDHQQKFDEE GGVDDGDRGG GGGGQRWLKE ETSALIKIRN DMDRSFRDSP LKGPLWAEVS 120 RKLAELGYQR SSKKCKEKFE NVYKYYKKSK DGRAGRQDGK SYRFFADMEA LFSGGGGGAA 180 GGTAGGGGGS PSSNIDHHHH HHHPDGTAQH ELVAVRGESG QHGGFDPASK RWPKPEVLAL 240 IKLRSSIEGK FQETGPKGPL WEEISSGMSC MGYSRSAKRC KEKWENINKY FRKTKDSSKK 300 RPENSKTCPY FHQLDALYRK GVLG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024526339.1	3e-84	trihelix transcription factor GTL1
TrEMBL	D8R332	0.0	D8R332_SELML; Uncharacterized protein (Fragment)
STRING	EFJ32875	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-44	Trihelix family protein

Link Out ? help Back to Top
Phytozome	85122
Entrez Gene	9634004

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]