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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 84991 | ||||||||
Common Name | SELMODRAFT_449949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 349aa MW: 39209.4 Da PI: 6.2575 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 320.9 | 2.7e-98 | 20 | 346 | 33 | 373 |
GRAS 33 pdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasR 135 p+ +p++R+ +++ +AL++r+++ ++++ + ++s++ ++a+++f++ +P+lkf+h+taNqaIle++ g++++Hi+D+di qG+QWp+L+qaL++ 84991 20 PHLsSPIERVSTHICKALSERITK--TSIF---DA-----TTSDDLAFARRAFYQHFPFLKFAHFTANQAILESLRGCSKLHIVDLDIDQGMQWPSLIQALSQ- 112 333379******************..2222...22.....2368999******************************************************98. PP GRAS 136 pegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl 234 e++pslRiTgvgs s el++tg+rL++fA+++g +++++++ ++ ++l+++++++ + laVn+++ lhrll ++ +le +L +++ 84991 113 IENAPSLRITGVGS----SLAELQSTGRRLTEFATSIGYhKLDYHPVRLDSPDQLDPSAFSLGDdddqDLGLAVNCSMFLHRLLGNHPALER----TLCMIRAW 208 6889**********....9*******************747******999**********998865444469************88888888....******** PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 +P++v+v+e ea+hn++sF++rf+eal++ysa+fd+le+ l+r++ +ri +E ++++ ei++++acega+r+ rh + e+Wr+ ++ +GFk v ls++ qa+ 84991 209 NPRIVTVSEMEANHNTPSFVDRFVEALHFYSAVFDCLESALARTDPDRIYIEGAMFAGEIRSILACEGADRIVRHARSESWRDFMRWSGFKDVGLSDHSLYQAH 312 ******************************************************************************************************** PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l ++ + yr+ e+++l+lgW+d p+vs+S W 84991 313 VFLTLYS-QAYRLTREEQALILGWHDTPVVSISTW 346 *******.55************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.02 | 1 | 328 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-96 | 20 | 346 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MATSKLILDH LAASSRDHPP HLSSPIERVS THICKALSER ITKTSIFDAT TSDDLAFARR 60 AFYQHFPFLK FAHFTANQAI LESLRGCSKL HIVDLDIDQG MQWPSLIQAL SQIENAPSLR 120 ITGVGSSLAE LQSTGRRLTE FATSIGYHKL DYHPVRLDSP DQLDPSAFSL GDDDDQDLGL 180 AVNCSMFLHR LLGNHPALER TLCMIRAWNP RIVTVSEMEA NHNTPSFVDR FVEALHFYSA 240 VFDCLESALA RTDPDRIYIE GAMFAGEIRS ILACEGADRI VRHARSESWR DFMRWSGFKD 300 VGLSDHSLYQ AHVFLTLYSQ AYRLTREEQA LILGWHDTPV VSISTWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-56 | 13 | 346 | 27 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU262744 | 8e-09 | Selaginella moellendorffii putative DELLA protein mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002965561.1 | 0.0 | DELLA protein RGL1 | ||||
TrEMBL | D8R3Q5 | 0.0 | D8R3Q5_SELML; GRAS family protein | ||||
STRING | EFJ32981 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2520 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 6e-69 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | 84991 |
Entrez Gene | 9634613 |
Publications ? help Back to Top | |||
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