PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

83927

Common Name

SELMODRAFT_449643

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 410aa MW: 46007.8 Da PI: 7.0256

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
83927	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	311.9	1.5e-95	27	395	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lLl+ Aea+ s+ l la+ +L rl+el +s++g +qRla yfteAL++ l + ++ k ++ +++ ++++a+++++e+sP++kf+h +aNqaI 83927 27 FHLLLAGAEAMFSQALDLAKVILFRLRELtssCSSSGPVFQRLALYFTEALQSLLDG--ARITKVA---SSCSMSYLDSITAFQALHEASPYIKFGHYVANQAI 125 699***********************97667788899*************9..5555444...444445999********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205 lea+ ++rvHi+D+d++ G+QWp+L+qaLa R++g+p+lRiT+v +p+s + + +et+erL + A+++++pf+f+ +++ ed +l L++ +gE+l+Vn 83927 126 LEAIGDDKRVHILDYDVTLGIQWPSLMQALALREGGTPHLRITAVYRPHSRhQLANFQETKERLMECAAAFKIPFSFHQAKVEDDEDSKLVGLKLIKGETLIVN 229 *******************************************99888999********************999999*************** PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 ++l+l +++++s s+ ++Lk v++ sP++v++ve+e +++ ++++ +++f++al++ysa++dslea+l e+ + i vEr++l+ +i+ ++ + + + 83927 230 CMLHLLHVPHKSPSSVL---SFLKSVQKFSPRLVTFVEEEvVSClSAPNTVDKFFQALHHYSAMLDSLEASL-CETTAHILVERAFLATRIKTALIAHHHA--- 326 ****977777766...9***************54557999*******************9.556789*********999888887... PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSaWr 374 ++ +W++ l++aGF+ v+ls ++ +qa+lll +k dgy+++ ee + l+l Wk+rpL+++SaW+ 83927 327 --HSKVEWSSLLHSAGFHRVSLSRRNICQARLLLGLFK-DGYQLKehhsdEEIEKLLLSWKSRPLIAASAWT 395 ..45678***************************.**55444447899*************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.194	1	371	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-93	27	395	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MNFDDFQLPG DPELDLQHQE FFGCRLFHLL LAGAEAMFSQ ALDLAKVILF RLRELTSSCS 60 SSGPVFQRLA LYFTEALQSL LDGARITKVA SSCSMSYLDS ITAFQALHEA SPYIKFGHYV 120 ANQAILEAIG DDKRVHILDY DVTLGIQWPS LMQALALREG GTPHLRITAV YRPHSRHQLA 180 NFQETKERLM ECAAAFKIPF SFHQAKVEDD EDSKLVGLKL IKGETLIVNC MLHLLHVPHK 240 SPSSVLSFLK SVQKFSPRLV TFVEEEVVSC LSAPNTVDKF FQALHHYSAM LDSLEASLCE 300 TTAHILVERA FLATRIKTAL IAHHHAHSKV EWSSLLHSAG FHRVSLSRRN ICQARLLLGL 360 FKDGYQLKEH HSDEEIEKLL LSWKSRPLIA ASAWTCKNKS SDGSENEQQ*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MNFDDFQLPG DPELDLQHQE FFGCRLFHLL LAGAEAMFSQ ALDLAKVILF RLRELTSSCS  60
SSGPVFQRLA LYFTEALQSL LDGARITKVA SSCSMSYLDS ITAFQALHEA SPYIKFGHYV  120
ANQAILEAIG DDKRVHILDY DVTLGIQWPS LMQALALREG GTPHLRITAV YRPHSRHQLA  180
NFQETKERLM ECAAAFKIPF SFHQAKVEDD EDSKLVGLKL IKGETLIVNC MLHLLHVPHK  240
SPSSVLSFLK SVQKFSPRLV TFVEEEVVSC LSAPNTVDKF FQALHHYSAM LDSLEASLCE  300
TTAHILVERA FLATRIKTAL IAHHHAHSKV EWSSLLHSAG FHRVSLSRRN ICQARLLLGL  360
FKDGYQLKEH HSDEEIEKLL LSWKSRPLIA ASAWTCKNKS SDGSENEQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-47	9	398	2	382	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8R2Z1	0.0	D8R2Z1_SELML; GRAS family protein
STRING	EFJ33188	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6839	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	3e-80	GRAS family protein

Link Out ? help Back to Top
Phytozome	83927
Entrez Gene	9633983

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]