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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 83267 | ||||||||
Common Name | SELMODRAFT_83267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 295aa MW: 33990.4 Da PI: 7.9385 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 178.9 | 3.6e-55 | 4 | 283 | 89 | 374 |
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 P l+ + aNq+Il+a g++rvHi+D++i +G QWp+L++aL++R+egpp l+iTg++ p+ +le+tg+rL ++A+++g+++ef+ +++ ++e+ +++ 83267 4 PSLRATERFANQMILDACRGAKRVHIVDYGILYGDQWPSLIKALSERAEGPPLLKITGIDFPS---LVNLEKTGNRLVDYAKSCGMHLEFHSIATAAWESAQPR 104 677777889****************************************************65...899***********************988899998776 PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgrei 294 E l Vn++l++ ++ e++ ++s+r+ +L+ + s +P ++ + ad +s+ F +rf a + + a ++s+e+++ e + + +++++ + 83267 105 YH--LFSELLFVNCQLRMRHIR-EDGIIDSPRKLFLEKILSFKPVMFFQSVVHADIGSPFFIHRFDGAWRSFLARLESFEETMKLELidQSQLDFMDKFIEKCA 205 43..238*************96.9999****************************************************99987665555555555555***** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++ac g++r+er ++++W + ++ F+++p+s++a + + ++ + ++ ++ ++++l+lgWkd L ++S+W+ 83267 206 MGAIACDGQNRVERISSYKTWDRLARKGQFGQLPVSKRALEMVMSVWSGHE--NFTYGMDENWLLLGWKDVVLNALSVWE 283 ****************************************99999999888..59************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 29.532 | 1 | 265 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-52 | 4 | 283 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MNLPSLRATE RFANQMILDA CRGAKRVHIV DYGILYGDQW PSLIKALSER AEGPPLLKIT 60 GIDFPSLVNL EKTGNRLVDY AKSCGMHLEF HSIATAAWES AQPRYHLFSE LLFVNCQLRM 120 RHIREDGIID SPRKLFLEKI LSFKPVMFFQ SVVHADIGSP FFIHRFDGAW RSFLARLESF 180 EETMKLELID QSQLDFMDKF IEKCAMGAIA CDGQNRVERI SSYKTWDRLA RKGQFGQLPV 240 SKRALEMVMS VWSGHENFTY GMDENWLLLG WKDVVLNALS VWEPIEKLPR FKHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-21 | 13 | 282 | 97 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002965005.2 | 0.0 | scarecrow-like protein 31 | ||||
TrEMBL | D8R158 | 0.0 | D8R158_SELML; Uncharacterized protein | ||||
STRING | EFJ33843 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 2e-51 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 83267 |
Entrez Gene | 9633642 |
Publications ? help Back to Top | |||
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