PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 83267
Common NameSELMODRAFT_83267
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 295aa    MW: 33990.4 Da    PI: 7.9385
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
83267genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS178.93.6e-55428389374
   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
            P l+ +   aNq+Il+a  g++rvHi+D++i +G QWp+L++aL++R+egpp l+iTg++ p+     +le+tg+rL ++A+++g+++ef+ +++ ++e+ +++
  83267   4 PSLRATERFANQMILDACRGAKRVHIVDYGILYGDQWPSLIKALSERAEGPPLLKITGIDFPS---LVNLEKTGNRLVDYAKSCGMHLEFHSIATAAWESAQPR 104
            677777889****************************************************65...899***********************988899998776 PP

   GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgrei 294
                   E l Vn++l++ ++  e++ ++s+r+ +L+ + s +P ++  +   ad +s+ F +rf  a + + a ++s+e+++  e   + +     +++++ +
  83267 105 YH--LFSELLFVNCQLRMRHIR-EDGIIDSPRKLFLEKILSFKPVMFFQSVVHADIGSPFFIHRFDGAWRSFLARLESFEETMKLELidQSQLDFMDKFIEKCA 205
            43..238*************96.9999****************************************************99987665555555555555***** PP

   GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
            + ++ac g++r+er  ++++W +  ++  F+++p+s++a + + ++ + ++   ++   ++++l+lgWkd  L ++S+W+
  83267 206 MGAIACDGQNRVERISSYKTWDRLARKGQFGQLPVSKRALEMVMSVWSGHE--NFTYGMDENWLLLGWKDVVLNALSVWE 283
            ****************************************99999999888..59************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.5321265IPR005202Transcription factor GRAS
PfamPF035141.2E-524283IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNLPSLRATE RFANQMILDA CRGAKRVHIV DYGILYGDQW PSLIKALSER AEGPPLLKIT  60
GIDFPSLVNL EKTGNRLVDY AKSCGMHLEF HSIATAAWES AQPRYHLFSE LLFVNCQLRM  120
RHIREDGIID SPRKLFLEKI LSFKPVMFFQ SVVHADIGSP FFIHRFDGAW RSFLARLESF  180
EETMKLELID QSQLDFMDKF IEKCAMGAIA CDGQNRVERI SSYKTWDRLA RKGQFGQLPV  240
SKRALEMVMS VWSGHENFTY GMDENWLLLG WKDVVLNALS VWEPIEKLPR FKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-211328297374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965005.20.0scarecrow-like protein 31
TrEMBLD8R1580.0D8R158_SELML; Uncharacterized protein
STRINGEFJ338430.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.12e-51GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]