PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

70744

Common Name

SELMODRAFT_450567

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 368aa MW: 42232 Da PI: 7.7857

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
70744	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	247.4	5.6e-76	3	367	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 + lL++cAeav+++d ++a +l+++l a + ++++R++ yft+AL arl + + ++y++++ + + +++ a + P+l+ + + aNq+Ilea 70744 3 EGLLVACAEAVAANDSAQAYELVEELTSFAYSGESSLHRAVLYFTNALVARLRGYGAQMYRIMSKEVSI-----RQTLA---VQMNLPVLRATEFFANQTILEA 98 569*************************************************999999877555443.....22222...34567************* PP GRAS 106 vege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206 g+ ++Hi+D++i +G QWp+L++aL++R+egpp ++ iTg++ +s + ++++tge L +A+++gvp+ef+++v++++e+ e++ +++++E l++n+ 70744 99 CRGQrnLKLHIVDYGIFYGCQWPSLIEALSQRDEGPPkKMMITGIEL-TSIAEASMRQTGEGLIAYAKSCGVPLEFQPVVSNTWEKAEPR-YHLSSDEFLVINC 200 944456*********************888879***9.6679***********************999*987.589****** PP GRAS 207 vlqlhrlldesvs.leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309 l++ +l ++ +es+r+ + k + +l+P ++v + +d++s+ F +rf ea + ++ +e+++ + + + ++l+++ ++n+vacega+r+er 70744 201 KLRMRHLREDGYIlMESPRKIFFKNIARLKPALFVQCVVTTDLSSPFFIHRFREAWRDIHIRMEQIEETMQVIDPPKLEYLNRLMEKTVMNMVACEGADRIERL 304 ***9776551566*************************************************99999999999999**************** PP GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++W+ ++aGF+++p+s++a + +kl+ +k + ++ ++++l+lgWkd +L+++SaW+ 70744 305 SSYKTWNYLATRAGFEKLPISNQALQMVKLVWTSHK-K-FTYGIDEKWLLLGWKDVTLTAMSAWQ 367 ******************99988887777776.4.9999999****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.734	1	349	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-73	3	367	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
DLEGLLVACA EAVAANDSAQ AYELVEELTS FAYSGESSLH RAVLYFTNAL VARLRGYGAQ 60 MYRIMSKEVS IRQTLAVQMN LPVLRATEFF ANQTILEACR GQRNLKLHIV DYGIFYGCQW 120 PSLIEALSQR DEGPPKKMMI TGIELTSIAE ASMRQTGEGL IAYAKSCGVP LEFQPVVSNT 180 WEKAEPRYHL SSDEFLVINC KLRMRHLRED GYILMESPRK IFFKNIARLK PALFVQCVVT 240 TDLSSPFFIH RFREAWRDIH IRMEQIEETM QVIDPPKLEY LNRLMEKTVM NMVACEGADR 300 IERLSSYKTW NYLATRAGFE KLPISNQALQ MVKLVWTSHK KFTYGIDEKW LLLGWKDVTL 360 TAMSAWQP

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

DLEGLLVACA EAVAANDSAQ AYELVEELTS FAYSGESSLH RAVLYFTNAL VARLRGYGAQ  60
MYRIMSKEVS IRQTLAVQMN LPVLRATEFF ANQTILEACR GQRNLKLHIV DYGIFYGCQW  120
PSLIEALSQR DEGPPKKMMI TGIELTSIAE ASMRQTGEGL IAYAKSCGVP LEFQPVVSNT  180
WEKAEPRYHL SSDEFLVINC KLRMRHLRED GYILMESPRK IFFKNIARLK PALFVQCVVT  240
TDLSSPFFIH RFREAWRDIH IRMEQIEETM QVIDPPKLEY LNRLMEKTVM NMVACEGADR  300
IERLSSYKTW NYLATRAGFE KLPISNQALQ MVKLVWTSHK KFTYGIDEKW LLLGWKDVTL  360
TAMSAWQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-35	6	367	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024533477.1	0.0	scarecrow-like protein 14 isoform X1
Refseq	XP_024533483.1	0.0	scarecrow-like protein 33 isoform X2
Refseq	XP_024533488.1	0.0	scarecrow-like protein 33 isoform X2
TrEMBL	D8QP08	0.0	D8QP08_SELML; GRAS family protein
STRING	EFJ38849	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	6e-62	GRAS family protein

Link Out ? help Back to Top
Phytozome	70744
Entrez Gene	9633028

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]