PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59613
Common NameSELMODRAFT_52756
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 52aa    MW: 5952.72 Da    PI: 5.8142
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59613genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.72.7e-08651271320
   GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
            +    ++ + e++   +++ +r+i+n+vaceg +r+er  +++ W +r +
  59613   6 V----AEGKPEEHGFIQKVAARDIMNIVACEGLDRVERAASYRVWDARAK 51 
            3....3445555555566699************************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.991152IPR005202Transcription factor GRAS
PfamPF035149.4E-6651IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
EYFEAVAEGK PEEHGFIQKV AARDIMNIVA CEGLDRVERA ASYRVWDARA KR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977216.28e-28scarecrow-like protein 31
TrEMBLD8S1C52e-29D8S1C5_SELML; Uncharacterized protein (Fragment)
TrEMBLD8S1D21e-26D8S1D2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ218223e-30(Selaginella moellendorffii)
STRINGEFJ218252e-27(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.12e-10GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]