PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

444260

Common Name

SELMODRAFT_444260

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 1012aa MW: 111395 Da PI: 6.5546

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
444260	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	177.5	9.8e-55	620	1009	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgd.................pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +lLl++Aea +sg+ elaq++Larl+++ + p R+ f La+rl++ + +++ +p +t+ ++++e++aa k +++ 444260 620 RLLLHAAEACESGQDELAQSILARLNDHHHHQVFlqqqehhqnqqfhklqpPAYRIGLLFRDILAERLSK-RKARSSTPAPASTDATEVVERIAACKSLYD 719 69**********************995554422355778999**9**************9.44444455555555678********* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfd.........isqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAe....elg 173 +s +lk +h++aNqaI ea+e+ee+vHi+D++ s G+QW ++ + +++ p ++RiT + ++++l e L+++A+ + g 444260 720 TSTLLKCAHFIANQAIAEAIESEECVHILDLSeaanspsmnSSFGGQWSSFVASTLEQKlPRPIKIRITLTST----RQHALYFALESLRELARdhpkNAG 816 **************************96444444333789***9876555515556*****....555555555555555541111445 PP GRAS 174 .vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +fef +++++ + l+l+++ +k +E+l+Vn+v+ lh+l+ + e L+ ++ Pk+v +veqe++ ++sF erf e l+yy+al ++++a 444260 817 cAEFEFCGVLTRSGSPLSLSDMGLKVHEVLVVNFVFGLHKLV--------PVAEALDSIRASHPKIVLLVEQEMEP-QPSFIERFREGLDYYTALAECVAA 908 358**999*************************9........44569****************8.99****************99 PP GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr.....kvksdgyrveeesgslvlgWkdrpLv 368 + s +e+ kvE+ + ++e+++++a + + h++lekW+ ++++aG+ +ls+ +k a l + + k +g+ + +++gsl+lg +++ L 444260 909 SEEC-SlKEADKVEQLVWKPEVEELLAGNLE-----HQRLEKWNLWMSHAGLCCSRLSDMCEKLALGLFNfekagNNKTRGFDLVKDDGSLLLGFQGKVLA 1003 9544.45***************98776.....69999******************999887533221444889**************** PP GRAS 369 svSaWr 374 s+SaW+ 444260 1004 SASAWK 1009 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.986	592	984	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-52	620	1009	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 1012 aa Download sequence Send to blast
MYGMLSGQHH GTSFPVFHQQ QQQQQELYET CQREEQICLN GLLSSTATTT TSSSSSGSSH 60 SHSHAAVFLS SSKSLKAALS SNNITGSNSN SSWEVATATA TATGAAARTG QQLPEREHFH 120 HQQQHYNHNQ QLLAIDSTGV ISSTTAGGGF AGEPTSVLDL RSPSPNNSRA LGSASSSSAI 180 QNNTKKAGAS SSSSSDCNNS TTDAAKVKSR GNHHQEQQQQ RQQQQISSSF AQSSSSADLQ 240 DELEQAVAAA STGYGLSLFY SGQGIRQMEN YGGYEQQQQQ QQQQQQQQPP QELLHQQHQG 300 RSDQWLLQDV VGAQQDELLV HHLHQQQHLL PEKQKLEELE SELLGSCPSP GVPPAAPAPD 360 PSIIRWLFEE PFSGSAAAAA GAADVNVIPP PPPWQQQVMM MVKQEQPQQL SSSSSTSSLP 420 PHLAHLESFT RRTLPLVSSG APLFHHPHPM QFQDPLALSG SMNPLWQQQQ QQHNLQIGLE 480 HQQQHREPFL LGMLQDEQHQ QHMPNLFGQA PMSFMRASSP RALHPGLFVE NPGPSPLQLL 540 QQQQERELQQ AGKRQASRIP YVDEHVLLRP QPLPPSLKRE QQELQHPSSK VARQSPPNAQ 600 PGHPLQQHVL SSNSGAFPSR LLLHAAEACE SGQDELAQSI LARLNDHHHH QVFLQQQEHH 660 QNQQFHKLQP PAYRIGLLFR DILAERLSKR KARSSTPAPA STDATEVVER IAACKSLYDT 720 STLLKCAHFI ANQAIAEAIE SEECVHILDL SEAANSPSMN SSFGGQWSSF VASTLEQKLP 780 RPIKIRITLT STRQHALYFA LESLRELARD HPKNAGCAEF EFCGVLTRSG SPLSLSDMGL 840 KVHEVLVVNF VFGLHKLVPV AEALDSIRAS HPKIVLLVEQ EMEPQPSFIE RFREGLDYYT 900 ALAECVAASE ECSLKEADKV EQLVWKPEVE ELLAGNLEHQ RLEKWNLWMS HAGLCCSRLS 960 DMCEKLALGL FNFEKAGNNK TRGFDLVKDD GSLLLGFQGK VLASASAWKC C*

Sequence ? help Back to Top

Protein Sequence Length: 1012 aa Download sequence Send to blast

MYGMLSGQHH GTSFPVFHQQ QQQQQELYET CQREEQICLN GLLSSTATTT TSSSSSGSSH  60
SHSHAAVFLS SSKSLKAALS SNNITGSNSN SSWEVATATA TATGAAARTG QQLPEREHFH  120
HQQQHYNHNQ QLLAIDSTGV ISSTTAGGGF AGEPTSVLDL RSPSPNNSRA LGSASSSSAI  180
QNNTKKAGAS SSSSSDCNNS TTDAAKVKSR GNHHQEQQQQ RQQQQISSSF AQSSSSADLQ  240
DELEQAVAAA STGYGLSLFY SGQGIRQMEN YGGYEQQQQQ QQQQQQQQPP QELLHQQHQG  300
RSDQWLLQDV VGAQQDELLV HHLHQQQHLL PEKQKLEELE SELLGSCPSP GVPPAAPAPD  360
PSIIRWLFEE PFSGSAAAAA GAADVNVIPP PPPWQQQVMM MVKQEQPQQL SSSSSTSSLP  420
PHLAHLESFT RRTLPLVSSG APLFHHPHPM QFQDPLALSG SMNPLWQQQQ QQHNLQIGLE  480
HQQQHREPFL LGMLQDEQHQ QHMPNLFGQA PMSFMRASSP RALHPGLFVE NPGPSPLQLL  540
QQQQERELQQ AGKRQASRIP YVDEHVLLRP QPLPPSLKRE QQELQHPSSK VARQSPPNAQ  600
PGHPLQQHVL SSNSGAFPSR LLLHAAEACE SGQDELAQSI LARLNDHHHH QVFLQQQEHH  660
QNQQFHKLQP PAYRIGLLFR DILAERLSKR KARSSTPAPA STDATEVVER IAACKSLYDT  720
STLLKCAHFI ANQAIAEAIE SEECVHILDL SEAANSPSMN SSFGGQWSSF VASTLEQKLP  780
RPIKIRITLT STRQHALYFA LESLRELARD HPKNAGCAEF EFCGVLTRSG SPLSLSDMGL  840
KVHEVLVVNF VFGLHKLVPV AEALDSIRAS HPKIVLLVEQ EMEPQPSFIE RFREGLDYYT  900
ALAECVAASE ECSLKEADKV EQLVWKPEVE ELLAGNLEHQ RLEKWNLWMS HAGLCCSRLS  960
DMCEKLALGL FNFEKAGNNK TRGFDLVKDD GSLLLGFQGK VLASASAWKC C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-20	705	1008	90	378	Protein SCARECROW
5b3h_A	5e-20	705	1008	89	377	Protein SCARECROW
5b3h_D	5e-20	705	1008	89	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979754.1	0.0	probable nuclear hormone receptor HR38
TrEMBL	D8S8H5	0.0	D8S8H5_SELML; Uncharacterized protein
STRING	EFJ19156	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-23	RGA-like 2

Link Out ? help Back to Top
Phytozome	444260
Entrez Gene	9635169

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]