PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 441667
Common NameSELMODRAFT_441667
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family CAMTA
Protein Properties Length: 983aa    MW: 109753 Da    PI: 6.6126
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
441667genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.38.3e-55241384117
    CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeee 105
             e ++rwl++ e+++iL n++k++l   ++++p+sgsl+L++rk +r+frkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+e+np+fqrr+yw+Le +
  441667  24 EaQNRWLRPLEVIEILRNYQKFRLNPVPPNKPPSGSLFLFDRKTLRFFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEDNPNFQRRSYWMLEGA 126
             4499*************************************************************************************************** PP

    CG-1 106 lekivlvhylev 117
             +e+ivlvhy+ev
  441667 127 YEHIVLVHYREV 138
             **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.86118144IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-7421139IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4824137IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.6E-7439525IPR013783Immunoglobulin-like fold
CDDcd001028.03E-4441526No hitNo description
SuperFamilySSF812962.62E-16442525IPR014756Immunoglobulin E-set
PfamPF018335.2E-6442524IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.9E-21614728IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-19626726IPR020683Ankyrin repeat-containing domain
CDDcd002049.24E-19630724No hitNo description
PROSITE profilePS5029721.827632736IPR020683Ankyrin repeat-containing domain
SMARTSM002481400632661IPR002110Ankyrin repeat
PROSITE profilePS500889.404632664IPR002110Ankyrin repeat
PfamPF127962.2E-9637726IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.846665697IPR002110Ankyrin repeat
SMARTSM002480.0013665694IPR002110Ankyrin repeat
SMARTSM0024899704733IPR002110Ankyrin repeat
SuperFamilySSF525407.7E-8836889IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.077838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224839868IPR000048IQ motif, EF-hand binding site
PfamPF006120.0045840859IPR000048IQ motif, EF-hand binding site
SMARTSM000150.013861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.78862886IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057864883IPR000048IQ motif, EF-hand binding site
SMARTSM0001515932954IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.151934962IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MYDNRRLRFF PSQPEIDIYQ IIREAQNRWL RPLEVIEILR NYQKFRLNPV PPNKPPSGSL  60
FLFDRKTLRF FRKDGHNWRK KKDGKTVREA HERLKAGSVD VLHCYYAHGE DNPNFQRRSY  120
WMLEGAYEHI VLVHYREVTE GSRSSVYRSM QEAKENASHS RATGQSLPAS NSAISDVEVT  180
GPYKSPEAPV TPIESEGTDS GEEGHFNENN VVEQSSLLQQ VAQSSPVAPP STSVPVAAVP  240
AAAKNLEGVD YDDLLRNPDA YLGQKSIDAQ TWSTLLDNFG GTNTIEKMES TSQSHFLSPG  300
FSNHVYNSIT PTNHPFPPVI PTPDSHNMEV DLRQAQYSAQ DISKKPQTAI PNDASECYKV  360
ALPDVLVEDE GKTSLKKLDS FGRWMSREIG EDSQSSLLSG STDHAYWTLD DHNTFDEISN  420
FTQQIQDVGL GPSVSQDQQF SIVDFSPDWA FASEETKVIV AGNFLKRGAS PVWHCMFGEV  480
EVPAETIHEG VLRCKAPMHS PGRVPLYITL GDRLACSEIR EFEYRTATMK PVAGNPEQLQ  540
VEDEVLEQRF ARLISLNSDE ATKSEEQSDK VQLSKILELT SGLWEDPEPS ESEVGSSTRD  600
TVLQTLLKQQ LQRWLLVKVC DRDKGAAVLD AQGQSALHLA AALGYDWAVN PILAAGVGAN  660
FRDVHGWTGL HWAASRGREK VVSTLLAAGA SPGLVTDPTP QNSSGRTPAD LAASSGHKGM  720
AGLLAEMSLT THLTSLTLKE RNTDEIDSLS AVLAEEKAVE DFSDNQAANG GTDRSLLQGS  780
LRAVRNAARA AALIHASFRQ ESFRRRQEKI GEEIDNEYGM SMNEMKVLAS RNGGANRKEH  840
SAATKIQQKY RGWKGRRDFL LLRQRVVRIQ AHVRGHQVRR KFRKILWTVG ILDKAILRWR  900
RKRGGLRRAS AQTENTDDDD VLKAGRKQKE AQFQKAVTRV QSMVRSHEAQ EQYQRIQEAY  960
LQAVAGDSQA RNENERDETM LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gmr_A2e-1263072434122OR266 DE NOVO PROTEIN
4gmr_B2e-1263072434122OR266 DE NOVO PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971863.10.0calmodulin-binding transcription activator 3
TrEMBLD8RLU70.0D8RLU7_SELML; Uncharacterized protein
STRINGEFJ267800.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-119signal responsive 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]