PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

441201

Common Name

SELMODRAFT_441201

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

CAMTA

Protein Properties

Length: 933aa MW: 104686 Da PI: 7.4437

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
441201	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	133.2	8.9e-42	18	135	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 ++e ++rwlk+ e+++iL n++++ + l +++rp sgsl L++rk ++yf+kDG++w+kkkdgk+vrE+he+ K g+++vl+cy a++ee+p+fqr +yw+ 441201 18 VQEaCARWLKPPEVCDILRNYQRYGFDLnpVPPSRPASGSLHLFDRKALKYFQKDGHNWRKKKDGKAVREAHEQ-KSGSIDVLHCYCARGEEDPNFQR-SYWM 118 55669****************9988866899************************************8.9*****************9.9* PP CG-1 102 Leeelekivlvhylevk 118 Le ++e+ivlv+yl+v+ 441201 119 LEGAYEHIVLVQYLQVH 135 **************986 PP
2	CG-1	120.9	5.8e-38	617	699	35	118
CG-1 35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gsl+L++rk v+yfrkDG++w+kkk gk+vrE+h++LK g+++vl+cyY+h+ee+p+fqr +yw+Le ++++ivlvhyl+v+ 441201 617 LGGSLLLFDRKAVKYFRKDGHNWRKKKGGKAVREAHKRLKFGSIDVLHCYYTHGEEDPNFQR-SYWILEGAYKHIVLVHYLQVQ 699 579********************************************************9.9***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	59.555	14	140	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-51	17	135	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.4E-38	21	133	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	58.762	557	704	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.5E-52	560	699	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.0E-6	564	605	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.6E-30	618	697	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MATVRGVPQQ DFDMGQIVQE ACARWLKPPE VCDILRNYQR YGFDLNPVPP SRPASGSLHL 60 FDRKALKYFQ KDGHNWRKKK DGKAVREAHE QKSGSIDVLH CYCARGEEDP NFQRSYWMLE 120 GAYEHIVLVQ YLQVHQGRKS AYRAPEYLKP HAESPSILSS EHGDSSDDVE QLSSKYSILP 180 ETQGSFFQSD IDLNDLLDRP DMFLGQKALT PAVSLDMSGW KEVLRSYLEN PTNGPVKPED 240 ETLEQRTTRD AFLEQASPMK FEDGMFKLSP RASLSPKAIM EVLSPRGLGR QPQTHFEAQL 300 RAATAENVMK TAQSLSPTKR VSSPPPAQNV LVDMGRASQQ VLNGRFSSPG PLDVVSDTCY 360 IDILQNKPLV CVNGQYLRSR VEGSLNSGLT GHMPWVQKTK QVKACSDGSN YPKFARYFAI 420 IRATVPPSRP TKIGSNNIDA VSSSIWAAMD DYKDREETSN LPMPMELEMS AQFPRLSITD 480 FKKPLALIKI ASNAGSDLAQ SGPLSERWRM EWYAYALGIR INKPNKWVVE YLMVEYQFHI 540 GPKMATVRGM PQQDFDMRQI IQEACVRWLK PPEVCKILRN YQSYGFDLSH VPPSKPASEC 600 SFLLASIVTW TDLPKLLGGS LLLFDRKAVK YFRKDGHNWR KKKGGKAVRE AHKRLKFGSI 660 DVLHCYYTHG EEDPNFQRSY WILEGAYKHI VLVHYLQVQQ DLESAYKALE HPEAFSHAMD 720 SPLLSSVGTQ QGPSYQQGSL FQPGQDGGIL EDCIDLNDLL DSPDKFLGKK ALTPAVSLDM 780 SGWNELLRSY RENPTTGPVK QEDETSEQCT TNALLGQVLP MKFEDGMFKE SPGASLSPKA 840 IMEVLSPRGL GRQPQTHVEA QLRAAATNNA MKSLSPRWQE IISSPRPAQN VHEDMGCASQ 900 QEFDTGSALV KKSKLVEQDL RELAGQNEAT GR*

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MATVRGVPQQ DFDMGQIVQE ACARWLKPPE VCDILRNYQR YGFDLNPVPP SRPASGSLHL  60
FDRKALKYFQ KDGHNWRKKK DGKAVREAHE QKSGSIDVLH CYCARGEEDP NFQRSYWMLE  120
GAYEHIVLVQ YLQVHQGRKS AYRAPEYLKP HAESPSILSS EHGDSSDDVE QLSSKYSILP  180
ETQGSFFQSD IDLNDLLDRP DMFLGQKALT PAVSLDMSGW KEVLRSYLEN PTNGPVKPED  240
ETLEQRTTRD AFLEQASPMK FEDGMFKLSP RASLSPKAIM EVLSPRGLGR QPQTHFEAQL  300
RAATAENVMK TAQSLSPTKR VSSPPPAQNV LVDMGRASQQ VLNGRFSSPG PLDVVSDTCY  360
IDILQNKPLV CVNGQYLRSR VEGSLNSGLT GHMPWVQKTK QVKACSDGSN YPKFARYFAI  420
IRATVPPSRP TKIGSNNIDA VSSSIWAAMD DYKDREETSN LPMPMELEMS AQFPRLSITD  480
FKKPLALIKI ASNAGSDLAQ SGPLSERWRM EWYAYALGIR INKPNKWVVE YLMVEYQFHI  540
GPKMATVRGM PQQDFDMRQI IQEACVRWLK PPEVCKILRN YQSYGFDLSH VPPSKPASEC  600
SFLLASIVTW TDLPKLLGGS LLLFDRKAVK YFRKDGHNWR KKKGGKAVRE AHKRLKFGSI  660
DVLHCYYTHG EEDPNFQRSY WILEGAYKHI VLVHYLQVQQ DLESAYKALE HPEAFSHAMD  720
SPLLSSVGTQ QGPSYQQGSL FQPGQDGGIL EDCIDLNDLL DSPDKFLGKK ALTPAVSLDM  780
SGWNELLRSY RENPTTGPVK QEDETSEQCT TNALLGQVLP MKFEDGMFKE SPGASLSPKA  840
IMEVLSPRGL GRQPQTHVEA QLRAAATNNA MKSLSPRWQE IISSPRPAQN VHEDMGCASQ  900
QEFDTGSALV KKSKLVEQDL RELAGQNEAT GR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RHA2	0.0	D8RHA2_SELML; Uncharacterized protein
STRING	EFJ28494	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	6e-48	signal responsive 1

Link Out ? help Back to Top
Phytozome	441201
Entrez Gene	9632671

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]