PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

411325

Common Name

SELMODRAFT_411325

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

CAMTA

Protein Properties

Length: 384aa MW: 43007.9 Da PI: 5.1862

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
411325	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	124.3	5.2e-39	6	117	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 +e + rwlk++e+++iL n++++ + l +++rp sgsl+L++rk vr frkDG++wkk +g +he+LK g+++vl+cyYa++ee+p+fqr +yw+L 411325 6 QEaCVRWLKPHEVCDILRNYQSYGFDLnsVPPNRPASGSLFLFDRKAVRCFRKDGHNWKK--EG----QAHERLKSGSIDVLHCYYARGEEDPNFQR-SYWVL 101 45599***************9887765899**********************86..55....58**********************9.9 PP CG-1 103 eeelekivlvhylevk 118 e ++e+ivlvhyl+v+ 411325 102 EGAYEHIVLVHYLQVH 117 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	50.661	1	122	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-47	4	117	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.7E-36	8	115	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MRQIIQEACV RWLKPHEVCD ILRNYQSYGF DLNSVPPNRP ASGSLFLFDR KAVRCFRKDG 60 HNWKKEGQAH ERLKSGSIDV LHCYYARGEE DPNFQRSYWV LEGAYEHIVL VHYLQVHQGR 120 ESAYGASPEH PEPFSHSEHG DSSDHVEQME QLFSKDSLLS ETQSGQGDMF LGHQPLSPAV 180 SLDMSGWKEV LRSYRENPTN GPVKQEDSDA LEQRTTVDAS PGQVKFDDGI MFKLSPEAIP 240 SPKAIMEVLS QPGLGRQPHT LLEAQLRAAT AENAMKTAQS LSLRWRESVF SRPPAQNVLV 300 DMGRSSRQEE SDIKSLASFG RWALAKFGND DDAGAPLEAA PSVSSSVWAA MDVDKDREET 360 SNLPTPMELE MSAQFQRFSI TDL*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MRQIIQEACV RWLKPHEVCD ILRNYQSYGF DLNSVPPNRP ASGSLFLFDR KAVRCFRKDG  60
HNWKKEGQAH ERLKSGSIDV LHCYYARGEE DPNFQRSYWV LEGAYEHIVL VHYLQVHQGR  120
ESAYGASPEH PEPFSHSEHG DSSDHVEQME QLFSKDSLLS ETQSGQGDMF LGHQPLSPAV  180
SLDMSGWKEV LRSYRENPTN GPVKQEDSDA LEQRTTVDAS PGQVKFDDGI MFKLSPEAIP  240
SPKAIMEVLS QPGLGRQPHT LLEAQLRAAT AENAMKTAQS LSLRWRESVF SRPPAQNVLV  300
DMGRSSRQEE SDIKSLASFG RWALAKFGND DDAGAPLEAA PSVSSSVWAA MDVDKDREET  360
SNLPTPMELE MSAQFQRFSI TDL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024537773.1	1e-70	calmodulin-binding transcription activator 1
TrEMBL	D8RHA3	0.0	D8RHA3_SELML; Uncharacterized protein
STRING	EFJ28495	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	3e-46	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	411325
Entrez Gene	9631935

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]