PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

406689

Common Name

SELMODRAFT_406689

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 299aa MW: 34264.5 Da PI: 7.8783

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
406689	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	49.7	6.6e-16	102	152	109	162
GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 ++rvHiiD+++ +G QWp+L++aL++R+eg p ++iTg++ p+ + +le+tg 406689 102 AKRVHIIDYGVLYGDQWPSLIKALSERAEGLPLFKITGINFPS---RVNLEKTG 152 489*************************************977...44555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.324	1	298	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-13	102	152	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MLTTASRSVQ AQISSQEQQS LFDCSRLDYL TRILEEKDGL ELLLKLPQQQ QTSYQWRRLS 60 GCGARRMYAA MHQDVTRMQS ISIRMNLPSL RAMERFQPDD PAKRVHIIDY GVLYGDQWPS 120 LIKALSERAE GLPLFKITGI NFPSRVNLEK TGWSTTCGMH LELHSIATVA WESAQPRYHP 180 LDAARLRERD HRQPRKLFFE KILSFKPVML FQSVVHADIS SPFFIHRFDR AWRSFLARLE 240 SFEETMKLGL IDQSQLDFMD KFIEVSAICG AHLLVQNLGP PGSEALEMVM SVCENLAC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024543121.1	1e-124	scarecrow-like protein 34
TrEMBL	D8R152	0.0	D8R152_SELML; Uncharacterized protein
STRING	EFJ34204	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	2e-14	GRAS family protein

Link Out ? help Back to Top
Phytozome	406689
Entrez Gene	9659414

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]