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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 36301 | ||||||||
Common Name | SELMODRAFT_450949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 192aa MW: 21154.9 Da PI: 6.2592 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 166.9 | 1.6e-51 | 2 | 191 | 5 | 198 |
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108 +++c ea++++ +++a al+++l++ +sp+g++++Rla+yf eAL ar+++++ ly+++++++t +e+l+++++ s++sP + + + +Nq+Il+++++ 36301 2 IVKCCEAIAANATTQAYALVSELRDKSSPTGTTVERLAFYFSEALVARITGTGRLLYNTFKSRRT----IDETLQIFSTVSQTSPGFGLPIFFTNQTILDETSS 101 689************************************************9999**99999888....69999999*************************** PP GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 + rvH++Df+i+ G W++L++ +++R++gpp++R+T+v++p+++ e +g +L++fA+++gvpfef+ +v+ ++++++ ++L ++p 36301 102 AARVHVVDFGIGPGYRWLCLIKDFSERSGGPPHFRVTAVDRPSNSLFFPREDVGGKLERFASSVGVPFEFHSVVTAEWDSIQSSQLMIQP 191 *********************************************999*************************99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.592 | 1 | 192 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-49 | 2 | 191 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
SIVKCCEAIA ANATTQAYAL VSELRDKSSP TGTTVERLAF YFSEALVARI TGTGRLLYNT 60 FKSRRTIDET LQIFSTVSQT SPGFGLPIFF TNQTILDETS SAARVHVVDF GIGPGYRWLC 120 LIKDFSERSG GPPHFRVTAV DRPSNSLFFP REDVGGKLER FASSVGVPFE FHSVVTAEWD 180 SIQSSQLMIQ PD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-22 | 4 | 171 | 25 | 192 | Protein SCARECROW |
5b3h_A | 1e-22 | 4 | 171 | 24 | 191 | Protein SCARECROW |
5b3h_D | 1e-22 | 4 | 171 | 24 | 191 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002963651.1 | 1e-137 | scarecrow-like protein 14 | ||||
TrEMBL | D8QY01 | 1e-135 | D8QY01_SELML; GRAS family protein | ||||
STRING | EFJ35522 | 1e-136 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59450.1 | 9e-33 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 36301 |
Entrez Gene | 9655180 |
Publications ? help Back to Top | |||
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