PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

149826

Common Name

SELMODRAFT_449945

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 335aa MW: 38113.1 Da PI: 9.4915

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
149826	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.3	1.8e-101	2	332	42	374
GRAS 42 aayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144 a+yf+eAL ar++++++ ly+al++++ + e l+a++lf sP +++sh ++Nq+Il+a+ g+ rvHi+D++i +G+ Wp+L++a+++R++gpp+lRi 149826 2 AFYFAEALVARITGTGTLLYSALSSNKPA---FHEMLKAYRLFTRYSPNVRISHYVCNQTILDATVGAGRVHIVDYGILYGFMWPCLIKAFSEREGGPPHLRI 101 99*******************999998...9****************************************************************** PP GRAS 145 Tgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245 Tg++ p++g +e++ee g++L+++A+++gvpfef++++++++e +++++L ++++E+l+V+++++l +lldesv ++s+r+ vL+ ++s++Pkv++ + + 149826 102 TGIDFPQPGfkPAERVEESGRKLSEYAKQVGVPFEFHAIATTKWEGVQPSTLFLRHDEVLIVSSHFRLRHLLDESVMVDSPRKLVLSRIRSMKPKVFIQAVVN 204 ****999***********************9999********************************************************* PP GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 a++n++ F rf eal y+a+fd++++ +p+e er +E+ +lgrei n+vaceg+er+er et+++W++r +aGF+++pl+ +++++a+++l +++ + 149826 205 ANYNAPFFISRFREALALYAAFFDAIDTAIPPEYPERLLIEQSILGREILNIVACEGQERVERAETYKQWQSRTVKAGFEQLPLRPDIYAKARTMLGTYH-KS 306 ************************************************************************************************.55 PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 + + ++ ++l++gWk+ L +v++Wr 149826 307 FGIGHDGNWLLIGWKETVLHAVCSWR 332 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.95	1	313	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-99	2	332	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAFYFAEALV ARITGTGTLL YSALSSNKPA FHEMLKAYRL FTRYSPNVRI SHYVCNQTIL 60 DATVGAGRVH IVDYGILYGF MWPCLIKAFS EREGGPPHLR ITGIDFPQPG FKPAERVEES 120 GRKLSEYAKQ VGVPFEFHAI ATTKWEGVQP STLFLRHDEV LIVSSHFRLR HLLDESVMVD 180 SPRKLVLSRI RSMKPKVFIQ AVVNANYNAP FFISRFREAL ALYAAFFDAI DTAIPPEYPE 240 RLLIEQSILG REILNIVACE GQERVERAET YKQWQSRTVK AGFEQLPLRP DIYAKARTML 300 GTYHKSFGIG HDGNWLLIGW KETVLHAVCS WRVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-47	1	334	59	381	Protein SCARECROW
5b3h_A	9e-47	1	334	58	380	Protein SCARECROW
5b3h_D	9e-47	1	334	58	380	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974329.2	0.0	scarecrow-like protein 30
TrEMBL	D8RTQ3	0.0	D8RTQ3_SELML; GRAS-family protein
STRING	EFJ24551	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-111	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	149826
Entrez Gene	9657735

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]