PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00026471-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 362aa MW: 41163.7 Da PI: 6.0905

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00026471-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.8	1.8e-20	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 k+ien++nrqvtfskRrng++KKA+ELSvLCd++ SMil_00026471-RA_Salv 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVD 42 68******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.49E-19	1	42	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.619	1	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.4E-21	1	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-18	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-17	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDYLERALGK LKSEADRTYN 60 QAATSPASNS IIHTQVEEMQ QELIRYRCQL EDAEKKLRIY EGEISTLGEA EYREQVLEEN 120 LKHIRLRKAC FLFVFFIVVS HLVLCIRLSL CSSQQHVLQD QHSSPGAQTS QVMSYASHTT 180 DMNVLGARNP DNVLDWLPQR DPQVQILNFL DSNGLLPMRD QPQRMESILP QSLTLVHAPS 240 VHVYNHLSPS RSIEDDVQRS EFGPAIDVNL SPWAELYPTG NDPFPTAQPR ERALLELDQP 300 QRMESILPQS LTLVHAPSVH VYNHLSPSRS IEDDVQRSEF GPAIDVNLSP WAELYPTGLS 360 MA

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDYLERALGK LKSEADRTYN  60
QAATSPASNS IIHTQVEEMQ QELIRYRCQL EDAEKKLRIY EGEISTLGEA EYREQVLEEN  120
LKHIRLRKAC FLFVFFIVVS HLVLCIRLSL CSSQQHVLQD QHSSPGAQTS QVMSYASHTT  180
DMNVLGARNP DNVLDWLPQR DPQVQILNFL DSNGLLPMRD QPQRMESILP QSLTLVHAPS  240
VHVYNHLSPS RSIEDDVQRS EFGPAIDVNL SPWAELYPTG NDPFPTAQPR ERALLELDQP  300
QRMESILPQS LTLVHAPSVH VYNHLSPSRS IEDDVQRSEF GPAIDVNLSP WAELYPTGLS  360
MA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069762.1	1e-144	agamous-like MADS-box protein AGL104 isoform X2
TrEMBL	A0A4D9A4Q2	1e-163	A0A4D9A4Q2_SALSN; Uncharacterized protein
STRING	Migut.C00517.1.p	1e-125	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	2e-23	AGAMOUS-like 104