PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022170-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 269aa    MW: 29656.8 Da    PI: 6.2805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022170-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-1986136155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  SMil_00022170-RA_Salv  86 KKFRGVRQRP-WGKWAAEIRDPM----RrVRLWLGTYDTAEEAAMVYDHAAVQLRG 136
                            59********.**********83....46************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.74E-3086143No hitNo description
SMARTSM003805.8E-3687150IPR001471AP2/ERF domain
PROSITE profilePS5103222.94587144IPR001471AP2/ERF domain
PfamPF008471.1E-1187136IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2287144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-3087144IPR001471AP2/ERF domain
PRINTSPR003672.5E-108899IPR001471AP2/ERF domain
PRINTSPR003672.5E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFPTKYTEHH SHITTPEYSP HRPPIKTLRV SVTDADATDS SSDDDDPHLN RRRVRKYIHQ  60
VTLVPCCSDR RRSAAAGRKP RNATGKKFRG VRQRPWGKWA AEIRDPMRRV RLWLGTYDTA  120
EEAAMVYDHA AVQLRGPHAH TNFSPAPGCN TTSSSHHSVT SPNSVLRFFS PQADSSLASS  180
PAAAIDSADA YFPIFPLSDD SFSELEDPVS VPGLFDQETF WSDLYGTDIG WCGDAVVGSA  240
TDLGARFGSG DDFFLEFGDV FGPDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2083143162ATERF1
3gcc_A9e-2083143162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834244.12e-78PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUQ22e-45CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A4D8ZVK91e-108A0A4D8ZVK9_SALSN; Uncharacterized protein
STRINGMigut.E01228.1.p9e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.17e-36cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]