PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014025-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 166aa    MW: 18860.2 Da    PI: 6.947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014025-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-204090155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  SMil_00014025-RA_Salv 40 SLYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYILRG 90
                           57*******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-3140100No hitNo description
SuperFamilySSF541711.05E-234099IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-324199IPR001471AP2/ERF domain
PROSITE profilePS5103222.8134198IPR001471AP2/ERF domain
SMARTSM003801.0E-3541104IPR001471AP2/ERF domain
PfamPF008477.0E-134189IPR001471AP2/ERF domain
PRINTSPR003671.0E-114253IPR001471AP2/ERF domain
PRINTSPR003671.0E-116480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEMSTQKETS SEGETTLLKS PTQNYAPLNN SGLGRKRCSS LYRGVRQRHW GKWVAEIRLP  60
RNRTRVWLGT FDTAEEAAFA YDTAAYILRG DHANLNFPDL NHNSTRRHAT AALLEAKLSQ  120
QSTRKSDKKE RPAEVIMEMV CDVGNDTVQL STMPSLDMDV IWDELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-204298663ATERF1
3gcc_A3e-204298663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022035179.13e-48ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ03e-44ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A4D9BH522e-49A0A4D9BH52_SALSN; EREBP-like factor
STRINGLus100071241e-46(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-33ERF family protein