PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010479-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 295aa    MW: 34526.8 Da    PI: 5.3007
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010479-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.3e-2261141288
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w++++ eleHnH 
  SMil_00010479-RA_Salv  61 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKTDAN-----RPRPETRTGCPAMIKFRLMDNKRWRIIETELEHNHL 141
                            9***************99997.66779**************99888.....***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1961140IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.322174210IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-5185212IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDDVSLNSEP TYDEEAEEFE IDGECAMTEY VGQTGDVLQG DNPLPPAVGM EFESYDDVYF  60
FYNCYAKQQG FGVRVSNTWY RKSKERYRGK LSCSSAGFKK KTDANRPRPE TRTGCPAMIK  120
FRLMDNKRWR IIETELEHNH LTSRLMTNIE GSVATFIVKE DIQVEENRKE TRDFEVVYNT  180
SDVEVLCVCA LFNFRGYLCR HALCVINQIG LDEIPPQYIL ARWRKDINRS YTFDYRLNGI  240
DINNPVHRYD NLYRSVVKVV EEGRKSHDRY RFVAQSLEQM MNKVHIQDDY PTNAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073405.14e-87protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_011073406.14e-87protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2H5P0I71e-102A0A2H5P0I7_CITUN; Uncharacterized protein
STRINGMigut.I00751.1.p2e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.19e-39FAR1-related sequence 6