PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008984-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 985aa MW: 108110 Da PI: 5.487

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008984-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.4e-29	579	630	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ SMil_00008984-RA_Salv 579 AEKTISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 630 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	569	650	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-26	582	630	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-21	889	974	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.7E-26	890	971	No hit	No description
PROSITE profile	PS51745	23.946	890	972	IPR000270	PB1 domain
Pfam	PF00564	8.0E-17	890	971	IPR000270	PB1 domain
SMART	SM00666	1.5E-23	890	972	IPR000270	PB1 domain
CDD	cd06407	8.54E-36	891	971	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MPSEPEDDTT RRPPEVLMDL DLDLDASWPL DQIFAAAAAN CPAPPFLLST SDQPCSPLWA 60 FSDDNNTANL VAGTGFRFSD SSKIFSYSGN PEAATEGAVD NYDKKKLPTP LMGLMPMDNP 120 DGSCIIKQRM TQALRYFKDL TEQHVLAQVW APVKNGSRYV LTTSGQPFVL DPNSNGLHQY 180 RLVSLSYMFS VDGDTDGDLG LPGRVFRQKL PEWTPNVQYY TSKEFPRLSH ALNYNVRGTL 240 ALPVFEPSGQ SCVGVLELIM TSQKINYAPE VDKVCKALEA VNLKSSEILD HQSTQICNEG 300 RQNALAEILE IITVVCETHT LPLAQTWVPC RHRSILANGG GFKKSCSSFD GSCMGQICMS 360 TTDVAFYVVD ANMWGFRDAC AEHHLQKGQG VSGRAFESLN SCFCHDITEF CKTEYPLVHY 420 ARMFGLKSSF AICLRSNHTG NDDYVLEFFL PPNVESYEDQ QTLLNSLLVT VKQHFGSLRV 480 ASGKDLDHEW RSIEIIKGSM DEKRNMRPDF TATSPPRPPS VQNGETTHLD AFKGQLLMGE 540 FSGVIIKGNG SSPIEVQNGA SVAEAKDVGK KPERKRGKAE KTISLDVLQQ YFAGSLKDAA 600 KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGGEGT FSLTSLATSS 660 IPVTVGPISW APNMNGTNQQ SSPGSGPCEF QEEKKEVATK SHGADEQAEA SNQFFGDRST 720 KYEKLTPNGG GFVAGEGSYR SRTGSGSREE STGTPTSQGS CQGSPSLRNE TSPQNDPVVS 780 PVDEHRMKLE GSHEGVCQQT REINLASAFS IPGNFIPPPD GTFGAMLVED AGSSHDLRNL 840 CPAGEALFEE HVTEYSWTRP TLPDPMPKDC MAAPAEDHMP RFSARPEVKT ITIKATYRED 900 IIRFRLAIDS GIVKLKEEVA KRLKLELGTF DIKYLDDDHE WVLIACDADL LECFDVSRSS 960 GGNVIRLLVH DIMANLGSSC ESSGE

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MPSEPEDDTT RRPPEVLMDL DLDLDASWPL DQIFAAAAAN CPAPPFLLST SDQPCSPLWA  60
FSDDNNTANL VAGTGFRFSD SSKIFSYSGN PEAATEGAVD NYDKKKLPTP LMGLMPMDNP  120
DGSCIIKQRM TQALRYFKDL TEQHVLAQVW APVKNGSRYV LTTSGQPFVL DPNSNGLHQY  180
RLVSLSYMFS VDGDTDGDLG LPGRVFRQKL PEWTPNVQYY TSKEFPRLSH ALNYNVRGTL  240
ALPVFEPSGQ SCVGVLELIM TSQKINYAPE VDKVCKALEA VNLKSSEILD HQSTQICNEG  300
RQNALAEILE IITVVCETHT LPLAQTWVPC RHRSILANGG GFKKSCSSFD GSCMGQICMS  360
TTDVAFYVVD ANMWGFRDAC AEHHLQKGQG VSGRAFESLN SCFCHDITEF CKTEYPLVHY  420
ARMFGLKSSF AICLRSNHTG NDDYVLEFFL PPNVESYEDQ QTLLNSLLVT VKQHFGSLRV  480
ASGKDLDHEW RSIEIIKGSM DEKRNMRPDF TATSPPRPPS VQNGETTHLD AFKGQLLMGE  540
FSGVIIKGNG SSPIEVQNGA SVAEAKDVGK KPERKRGKAE KTISLDVLQQ YFAGSLKDAA  600
KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGGEGT FSLTSLATSS  660
IPVTVGPISW APNMNGTNQQ SSPGSGPCEF QEEKKEVATK SHGADEQAEA SNQFFGDRST  720
KYEKLTPNGG GFVAGEGSYR SRTGSGSREE STGTPTSQGS CQGSPSLRNE TSPQNDPVVS  780
PVDEHRMKLE GSHEGVCQQT REINLASAFS IPGNFIPPPD GTFGAMLVED AGSSHDLRNL  840
CPAGEALFEE HVTEYSWTRP TLPDPMPKDC MAAPAEDHMP RFSARPEVKT ITIKATYRED  900
IIRFRLAIDS GIVKLKEEVA KRLKLELGTF DIKYLDDDHE WVLIACDADL LECFDVSRSS  960
GGNVIRLLVH DIMANLGSSC ESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070353.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A4D8YYC5	0.0	A0A4D8YYC5_SALSN; Uncharacterized protein
STRING	Migut.E00644.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]