PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004272-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 314aa    MW: 35491.9 Da    PI: 8.3732
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004272-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.59.1e-46842172133
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 
                            agkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LG+dk+sktieWL++q+++aikel +++ + +++++ +s+s  ++      
  SMil_00004272-RA_Salv  84 AGKKDRHSKICTAQGIRDRRMRLSLQVARKFFDLQDMLGYDKASKTIEWLFTQSNKAIKELHRSPPPLPNNSDVKSESFLSE----Ce 167
                            89**************************************************************444333332222222222....12 PP

                    TCP  89 .....kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                 ++ +s+a   +++++ a + +  k sr+kararar rtrekm  k
  SMil_00004272-RA_Salv 168 dlsgiEEINSNAAITPNPTQMAVKPSSTKASREKARARARCRTREKMLVK 217
                            222454555555555555566656999********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4185214IPR005333Transcription factor, TCP
PROSITE profilePS5136936.31686144IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.916196213IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MFPSPNPNCN NPFESLLKIR PSSDQKHDEL LFNFPSPFLD EHESPLNQIF LLSADHDKRS  60
KSEMDHREIP PSSAPAAPQR RRRAGKKDRH SKICTAQGIR DRRMRLSLQV ARKFFDLQDM  120
LGYDKASKTI EWLFTQSNKA IKELHRSPPP LPNNSDVKSE SFLSECEDLS GIEEINSNAA  180
ITPNPTQMAV KPSSTKASRE KARARARCRT REKMLVKRLH ISGDSFKPNP NHIEAPGGGD  240
QQLINPYVDQ IRVSQELSDV GMILGNSSSE YHCDPSLVGY SYWDVLSNDR SNCFQYSQVS  300
FAGNLNSVFT AEFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071262.29e-66transcription factor TCP12
TrEMBLA0A4D9BPU21e-100A0A4D9BPU2_SALSN; Uncharacterized protein
STRINGSolyc04g006980.1.11e-52(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-28TCP domain protein 12