PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001785-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 482aa    MW: 54219.1 Da    PI: 9.9224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001785-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07331373343
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                            +W+   +  lv+a k ++++   +W+++a+ ++ g+t  qck +
  SMil_00001785-RA_Salv 331 SWSVVQERALVQALKTFPKDtnqRWERVAAAVP-GKTVAQCKKK 373
                            7********************************.********87 PP
2Myb_DNA-binding30.58.7e-10425471347
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                             W+   ++ l++a k ++++   +W+++a+ ++ g+t ++ck ++ ++
  SMil_00001785-RA_Salv 425 TWSDVQEKALIQALKTFPKDtnqRWERVAAAVP-GKTVNHCKKKFASL 471
                            7********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.668195250IPR017877Myb-like domain
SMARTSM007170.0014199252IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-6201244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-4326378IPR009057Homeodomain-like
PROSITE profilePS512938.235327382IPR017884SANT domain
SMARTSM007172.1E-8328380IPR001005SANT/Myb domain
SuperFamilySSF466894.99E-8330379IPR009057Homeodomain-like
PfamPF002493.9E-6331373IPR001005SANT/Myb domain
CDDcd001673.60E-5331378No hitNo description
PROSITE profilePS512939.606421476IPR017884SANT domain
SMARTSM007174.6E-8422474IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-5423471IPR009057Homeodomain-like
SuperFamilySSF466892.03E-9424479IPR009057Homeodomain-like
PfamPF002492.7E-8425471IPR001005SANT/Myb domain
CDDcd001673.30E-5425472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MERQNAKLSE KARKEEYARI RTLVDNAYKR DPRILRRKDE LKAEKLRKRE AKVLAKKMQE  60
EEAARIAEEE KKRKEEEEKR AAEAASNQRK IKEREKKLLR KERTRLRTLA GPILSQHLLG  120
LTDDDVESLC SSFDKDQLKS LCDRMEGKEV VESANLLAEC LNSDQKQKLK DGKEAEKNSK  180
PNGSVAMNGQ VAYSSYEKRE KPWAKEEIDL LRKGMLKFPK GTSRRWEVIS EYIGTGRSVE  240
EILKATKTVL LQKPDSAKAF DSFLEKRKPA PTIVSPLTTR DEVKGAPINV EESQSSAPDN  300
LPESSNHSVN SVSSDDSTAA NGVSSGTDQD SWSVVQERAL VQALKTFPKD TNQRWERVAA  360
AVPGKTVAQC KKKITVMKES FRSNNVADRG TEDSKDSSSQ TEETTKISAE SEAVNDVSSS  420
SDADTWSDVQ EKALIQALKT FPKDTNQRWE RVAAAVPGKT VNHCKKKFAS LKENFRSKKN  480
AV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022894879.10.0dnaJ homolog subfamily C member 2-like isoform X2
RefseqXP_022894880.10.0dnaJ homolog subfamily C member 2-like isoform X2
TrEMBLA0A4D8YCI80.0A0A4D8YCI8_SALSN; DnaJ-like protein subfamily C member 2
STRINGMigut.I00387.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-115DnaJ domain ;Myb-like DNA-binding domain