PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_15345.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TALE

Protein Properties

Length: 291aa MW: 32355.1 Da PI: 9.5984

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_15345.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.5	6.2e-10	96	133	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Sme2.5_15345.1_g00001.1 96 FEHflHPYPTDTDKVMLAKQTGLSRNQVSNWFINARVR 133 664459******************************98 PP
2	BELL	49.7	9.1e-17	1	41	32	72
BELL 32 tvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +v+ sFe vaglg+a+p++++A k++++hF+cLkd i++q+ Sme2.5_15345.1_g00001.1 1 MVVTSFESVAGLGNAAPFANIAIKTMAKHFKCLKDTIIDQL 41 79************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	1.5E-11	1	37	IPR006563	POX domain
PROSITE profile	PS50071	12.098	74	137	IPR001356	Homeobox domain
CDD	cd00086	3.28E-12	77	138	No hit	No description
SMART	SM00389	5.8E-10	77	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-17	79	143	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-28	80	141	IPR009057	Homeodomain-like
Pfam	PF05920	4.1E-19	94	133	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVVTSFESVA GLGNAAPFAN IAIKTMAKHF KCLKDTIIDQ LQFTTNKSSH QINCERGNVG 60 ISGKGIYCQR QETQPVWRPQ RGLPERAVTV LRAWLFEHFL HPYPTDTDKV MLAKQTGLSR 120 NQVSNWFINA RVRLWKPMVE EIHMLETREG HNRSSQKEGP NNSNNDNSNN LTEHFSMSNS 180 RACESSTPST STPRFHDLPS KRTRNDLADL PNNIGRFAES INLSYGNLST GVGGGGVSLT 240 LGLHQNSARR FGIENNTNSG RFTIGGFDEQ NGQFGRNNTM IGGQFLHDFA G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	83	141	5	63	Homeobox protein Meis2
3k2a_B	3e-16	83	141	5	63	Homeobox protein Meis2
4xrs_A	2e-16	83	140	1	58	Homeobox protein Meis1
4xrs_B	2e-16	83	140	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-117	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246395.1	1e-174	BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	1e-68	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	A0A0V0I3L2	1e-174	A0A0V0I3L2_SOLCH; Putative BEL1-like homeodomain protein 9-like (Fragment)
STRING	Solyc09g011380.2.1	1e-174	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3520	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	5e-66	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]