PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_09068.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 349aa MW: 39003.5 Da PI: 7.6139

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_09068.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.1	6.4e-38	70	225	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 ++k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ + + s +ss ++s+ Sme2.5_09068.1_g00007.1 70 PKKSTTTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANYSsLNISLRSSRHHST 155 678899**********************************************************9999977766666666666555 PP TCP 87 sg........................................kaaksaakskksqksaasalnlakesraka 118 + +++++ ++++++++++n+ ++ r+k Sme2.5_09068.1_g00007.1 156 TSnylahsnnfthvhhdrnyfshgvglfssqnsffpsgnlnmL--QAKEELCDDNDNNNNNNNYGRKRRSKD 225 5556666666777777777888888888877777766654322..222222222222222344444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-38	74	228	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.001	76	130	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MENVHHHHHH HDNIGSSIQR PNFPLQLLEK RDQVCSSHEL HHPYNMTTCN SDAPCVEKSK 60 NHQEEPKQQP KKSTTTKDRH TKVDGRGRRI RMPATCAARV FQLTKELGHK SDGETIEWLL 120 QQAEPAVIAA TGTGTIPANY SSLNISLRSS RHHSTTSNYL AHSNNFTHVH HDRNYFSHGV 180 GLFSSQNSFF PSGNLNMLQA KEELCDDNDN NNNNNNYGRK RRSKDQELLQ NYHIGNSNNM 240 SQSSNYGSIT ESHQVGQYMM TNNSSHHDPN NCSMWASPSS NNIENSNIRG GLLNFMNFHQ 300 PILGTRGGGG TAAEGQWGML TAAMNPYRQS GHATGSSNDH ADDGDNCRS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MENVHHHHHH HDNIGSSIQR PNFPLQLLEK RDQVCSSHEL HHPYNMTTCN SDAPCVEKSK  60
NHQEEPKQQP KKSTTTKDRH TKVDGRGRRI RMPATCAARV FQLTKELGHK SDGETIEWLL  120
QQAEPAVIAA TGTGTIPANY SSLNISLRSS RHHSTTSNYL AHSNNFTHVH HDRNYFSHGV  180
GLFSSQNSFF PSGNLNMLQA KEELCDDNDN NNNNNNYGRK RRSKDQELLQ NYHIGNSNNM  240
SQSSNYGSIT ESHQVGQYMM TNNSSHHDPN NCSMWASPSS NNIENSNIRG GLLNFMNFHQ  300
PILGTRGGGG TAAEGQWGML TAAMNPYRQS GHATGSSNDH ADDGDNCRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151815	1e-163	AC151815.1 Solanum demissum chromosome 5 clone PGEC472P22, complete sequence.
GenBank	EF514212	1e-163	EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.
GenBank	EF514213	1e-163	EF514213.1 Solanum tuberosum strain P6/210 contig r1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546616.1	1e-164	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A2G2VLK3	1e-166	A0A2G2VLK3_CAPBA; Transcription factor TCP8
STRING	Solyc05g007420.1.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-42	TCP family protein