PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_08580.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1047aa MW: 115628 Da PI: 6.1239

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_08580.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.2	2.2e-25	610	698	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.....................................vclTvLKriCRqyGIkRWPhRki 49 aek+isle+l++yF++++kdAAk+Lg vc+T++KriCRq+GI+RWP+Rki Sme2.5_08580.1_g00003.1 610 AEKTISLEVLQQYFAGSLKDAAKSLGgirnffctmfclrlsvhfpfpsvivdltilinflaitVCPTTMKRICRQHGISRWPSRKI 695 589*********************************************************************************** PP RWP-RK 50 ksl 52 +++ Sme2.5_08580.1_g00003.1 696 NKV 698 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.605	598	718	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-22	613	698	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-23	952	1038	No hit	No description
PROSITE profile	PS51745	24.892	952	1034	IPR000270	PB1 domain
SMART	SM00666	5.4E-25	952	1034	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.2E-26	952	1034	No hit	No description
Pfam	PF00564	1.0E-17	953	1033	IPR000270	PB1 domain
CDD	cd06407	7.85E-36	953	1033	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MSEPEEELNL IFRSKPKDFA PTPATQQQQQ PHTAGENHRE SLLMDLDLDL DASWSFDQIF 60 AAAASASNPM SPFLVSAASE QPCSPLWAFS DENEDKPNGN ALSGGSIRRS SYPRFVTYTS 120 EHEAAPETVS ITDDKKRIPP PIKGLPPLDY LDGSCIIKER MTQALRYFKE STGERVLAQV 180 WAPVKNCGRN VLTTSGQPFV LDPDCNGLHQ YRMVSLMYMF SVDGETDGVL GLPGRVYRKK 240 LPEWTPNVQL YSSKEFPRLN HALHYNVRGT LALPVFEPSG QSCVGVLELI MTSQKINYAP 300 EVDKVCKALE AVNLKSSEIL DYPNHQICNE GRQNALVEIL EILTAVCETY KLPLAQTWVP 360 CRHRSVLADG GGFKKSCSSF DGSCMGQVCM STTDVAYYVV DAHMWGFREA CAEHHLQKGQ 420 GVAGRAYASQ KSCFCEDIGQ FCKTEYPLVH YARLFRLSRC FAICLRSTHT GNDDYVLEFF 480 LPSNDGDYAD QLALLNSLLL TMKQHFRSLR VASGEELEHD WGSVEIIKAS TEEKLGSRFD 540 SVPTPKSLSQ HACVANGRTH PDLMEEQQSP VSLNVAKGAE GVNGTAEANH ASVSENKQTG 600 KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGGIRNF FCTMFCLRLS VHFPFPSVIV 660 DLTILINFLA ITVCPTTMKR ICRQHGISRW PSRKINKVNR SLSKLKRVIE SVQGADGTFS 720 LTSLTPNSLP VAVGSISWPA GINGSPCKAS EYQEEKNEFP NHGTPGSHEE AEPLNQMLGS 780 RIIGNEELSP KQNGFVREGS HRSRTGSFSR EESTGTPTSH GSCQGSPSPA NESSPQNELV 840 NSPTHDSVMK VEGPLEPARQ TTGEINLSTA FLMPGLCIPE HTHQQFRGML VEDAGSSHDL 900 RNLCPAGDAM FDERVPEYSW TNPPCSNGIA KDQVLPPAEK MPQFSIRPEV TSVTIKATYK 960 EDIIRFRLCL NSGIFTLKEE VAKRLKLEVG TFDIKYLDDD HEWVLIACDA DLQECVDISR 1020 SSGNNVVRLL VHDTMPNLGS SCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MSEPEEELNL IFRSKPKDFA PTPATQQQQQ PHTAGENHRE SLLMDLDLDL DASWSFDQIF  60
AAAASASNPM SPFLVSAASE QPCSPLWAFS DENEDKPNGN ALSGGSIRRS SYPRFVTYTS  120
EHEAAPETVS ITDDKKRIPP PIKGLPPLDY LDGSCIIKER MTQALRYFKE STGERVLAQV  180
WAPVKNCGRN VLTTSGQPFV LDPDCNGLHQ YRMVSLMYMF SVDGETDGVL GLPGRVYRKK  240
LPEWTPNVQL YSSKEFPRLN HALHYNVRGT LALPVFEPSG QSCVGVLELI MTSQKINYAP  300
EVDKVCKALE AVNLKSSEIL DYPNHQICNE GRQNALVEIL EILTAVCETY KLPLAQTWVP  360
CRHRSVLADG GGFKKSCSSF DGSCMGQVCM STTDVAYYVV DAHMWGFREA CAEHHLQKGQ  420
GVAGRAYASQ KSCFCEDIGQ FCKTEYPLVH YARLFRLSRC FAICLRSTHT GNDDYVLEFF  480
LPSNDGDYAD QLALLNSLLL TMKQHFRSLR VASGEELEHD WGSVEIIKAS TEEKLGSRFD  540
SVPTPKSLSQ HACVANGRTH PDLMEEQQSP VSLNVAKGAE GVNGTAEANH ASVSENKQTG  600
KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGGIRNF FCTMFCLRLS VHFPFPSVIV  660
DLTILINFLA ITVCPTTMKR ICRQHGISRW PSRKINKVNR SLSKLKRVIE SVQGADGTFS  720
LTSLTPNSLP VAVGSISWPA GINGSPCKAS EYQEEKNEFP NHGTPGSHEE AEPLNQMLGS  780
RIIGNEELSP KQNGFVREGS HRSRTGSFSR EESTGTPTSH GSCQGSPSPA NESSPQNELV  840
NSPTHDSVMK VEGPLEPARQ TTGEINLSTA FLMPGLCIPE HTHQQFRGML VEDAGSSHDL  900
RNLCPAGDAM FDERVPEYSW TNPPCSNGIA KDQVLPPAEK MPQFSIRPEV TSVTIKATYK  960
EDIIRFRLCL NSGIFTLKEE VAKRLKLEVG TFDIKYLDDD HEWVLIACDA DLQECVDISR  1020
SSGNNVVRLL VHDTMPNLGS SCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343817.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1AWK0	0.0	M1AWK0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]