PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07423.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 625aa    MW: 70720.2 Da    PI: 9.9645
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07423.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.71.5e-32378479195
                      TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas 83 
                              a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l +   +++ +c   +a + + s +
  Sme2.5_07423.1_g00002.1 378 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEF--PNNFHCtklNATKMQYSFD 461
                              589***********************************************************998..4444455443333333333 PP

                      TCP  84 nsssg......kaaksaa 95 
                              +++s+      +  ++++
  Sme2.5_07423.1_g00002.1 462 QEQSPkfsqenRVVTNTE 479
                              333333333222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500969.7616290IPR000048IQ motif, EF-hand binding site
PfamPF036349.2E-31379485IPR005333Transcription factor, TCP
PROSITE profilePS5136930.013381439IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MGSADWLKNV IGMRKAKDGR SKKLKGTSAT KKSNGCKGEK EPSKITNGIL INNQRELGMP  60
IEDGAAIKIQ TAFRAYVARK ALRRLKGNTR LQSLTQRPSV KKQASSALNY ISSWNTMQNE  120
IRARRVHMVM EGHLKRKKHE NQLKLETKLQ NIEIEWSGGP ETMEVILARI HQREEAAIKR  180
ERAMAYAFTH QWRANSNPIF GSGNNEMNKA NWGWSWTDRW VAARPWESRV LVYASLKKVS  240
DKAIKNTKKT PVSVKLTSLY GKGTIKAKKS TEVATQKASS KVKESSSEKQ EVFQVSDEED  300
GSEEEEEEEE EIFQENGIEN LQNHYQNQQL PQPFCQKTAK WANFTACEQE LNEVTKQVKP  360
KRAKTDVMEV HGGRIVRATG RKDRHSKVST AKGPKDRRVR LSPNTAIQFY DVQDRLGYDR  420
PSKAIDWLIK EAKAAIDALG EFPNNFHCTK LNATKMQYSF DQEQSPKFSQ ENRVVTNTEF  480
GNQNNQQEVN YDIPIQNGNL FSSSDGFKIP ILSGFQSYPH GHFLNFQSLQ DDTTLSSANH  540
HHQHHQGSFL TTTSVNHFPS VLSQNQVFSP REPLQSSFFP PTSDPLSTQL ETLSYGFAND  600
GFSGVISSAS RTQEEEEQGT LFSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-19386439154Putative transcription factor PCF6
5zkt_B9e-19386439154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.10.0transcription factor TCP10-like
TrEMBLM1C3U20.0M1C3U2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000591170.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-35TCP family protein