PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05994.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 425aa    MW: 48053.2 Da    PI: 6.9602
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05994.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-083523891954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +e+  L++++ L+++qV++WF N R +
  Sme2.5_05994.1_g00002.1 352 FEHflHPYPNDSEKLMLSSQTCLSKNQVSNWFINARVR 389
                              554459******************************88 PP
2BELL100.81e-32214285172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              er+el  k+ kL+ lleeV++rY+qy++ ++ v s Fe++ag g+ kpYt+lAl+a+SrhF cL+dai++qi
  Sme2.5_05994.1_g00002.1 214 ERHELYVKIMKLIALLEEVERRYEQYYQHMEEVSSTFEVIAGFGAGKPYTALALQAMSRHFCCLRDAIISQI 285
                              799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-29145283IPR006563POX domain
PfamPF075269.4E-39150281IPR006563POX domain
PROSITE profilePS5007110.997330393IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-25332407IPR009057Homeodomain-like
SMARTSM003891.8E-6333397IPR001356Homeobox domain
CDDcd000862.54E-9333394No hitNo description
SuperFamilySSF466892.1E-16338400IPR009057Homeodomain-like
PfamPF059209.1E-16350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MVSKGSPPPS HSSILYQFIN SDSITSQIGN QHFDIYQSDP SGNTSTSTTY QPHGGLSRSM  60
EFVNPPHFTT DVNHSRHLMD LLGASHDATN QQAQRLSLSL SSHSLVSSFG NPSYMSQEID  120
QRNNEFSFSA AAAMNQSFST VCGTESFVSV IGNSRYLKPT QSLLEELVCI GGKPIDSSNE  180
KFIRRLSRNS KKGSLSLRAM LKGEIPPSNG SFNERHELYV KIMKLIALLE EVERRYEQYY  240
QHMEEVSSTF EVIAGFGAGK PYTALALQAM SRHFCCLRDA IISQISVIRH KMPRDVPKIS  300
SGLSHLSLFE KETLQNRMSL QQLEIIQTNR QAWRPIRGLP ETSVAILRSW LFEHFLHPYP  360
NDSEKLMLSS QTCLSKNQVS NWFINARVRL WKPMIEEMYK EEFAESSIES DHLLNREGVT  420
DSAEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14339397563Homeobox protein Meis2
3k2a_B2e-14339397563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759650.0AF375965.1 Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072329.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD16e-94BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLM0ZWL80.0M0ZWL8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-89BEL1-like homeodomain 11