PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05323.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 272aa MW: 28283.6 Da PI: 10.3875

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05323.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.1e-38	35	132	2	100
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ss Sme2.5_05323.1_g00003.1 35 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRNSTSSL 119 689******************************************************************777.4444444444444 PP TCP 88 gkaaksaakskks 100 g++ ++ +k+s Sme2.5_05323.1_g00003.1 120 GSSLSAPLDQKSS 132 4333333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.5E-34	42	132	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSNSAEGNGA IIDPQRQQQQ QQQQPSGVGT NGALTVKKPP VKDRHSKVDG RGRRIRMPIV 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT IPASFSTVSV SVRNSTSSLG 120 SSLSAPLDQK SSQSLISPAP FILGKRLRSD DENIENGSKD DVAAAAAAGA TAVGPTAGFW 180 AVPARPDFGQ IWSFAAAGPP PEMMVPTSAA AAAAAAAALS SQSSRFFQQQ MGEASAARVG 240 NYLPMTQGHL NLLASLSGPP QPSSGRRDDD GR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496332	0.0	GQ496332.1 Solanum lycopersicum TCP transcription factor 14 (TCP14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001293140.1	1e-164	TCP transcription factor 14
Swissprot	Q9FMX2	2e-86	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV4	1e-163	G3BGV4_SOLLC; TCP transcription factor 14
STRING	Solyc04g009180.1.1	1e-164	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-74	TCP family protein