PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05139.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 354aa MW: 37980.5 Da PI: 7.7695

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05139.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.7	5.8e-36	68	173	1	105
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 aa+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++ +++ + +s++ Sme2.5_05139.1_g00004.1 68 AAPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTSSP 153 689**************************************************************666663333222222222222 PP TCP 86 ssgkaaksaakskksqksaa 105 s+++ +++++k+++ks++ Sme2.5_05139.1_g00004.1 154 ASNREIDENNPQKRRRKSTN 173 22222223322222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-29	74	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.584	75	129	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSTFHDPDDE CGTSELSNGA GGDLNDRKMD GDGVADEKVL FSVMKEEPFD SDHHTLVPAM 60 PMPVATAAAP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVRWLLE 120 HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT SSPASNREID ENNPQKRRRK STNSDFIDIG 180 SLNRNAANVS QFAPVTVAAA AAAAAPAPPP GLIPIWGMSN GGMMVPSNAI WMIPATVPPN 240 NNNNNNVLQY PQLWTPVFNL ATRPISSFAT AAATSVPPVV TMNDAATSKV GSNKSSMAPA 300 SVSSSSIDRN NNNNDVKPHM LRDFSLEIYD RKELQFLSPS GNHHQQVTSS KPSR

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSTFHDPDDE CGTSELSNGA GGDLNDRKMD GDGVADEKVL FSVMKEEPFD SDHHTLVPAM  60
PMPVATAAAP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVRWLLE  120
HAEQSIIEAT GTGTVPAIAV SVNGTLKIPT SSPASNREID ENNPQKRRRK STNSDFIDIG  180
SLNRNAANVS QFAPVTVAAA AAAAAPAPPP GLIPIWGMSN GGMMVPSNAI WMIPATVPPN  240
NNNNNNVLQY PQLWTPVFNL ATRPISSFAT AAATSVPPVV TMNDAATSKV GSNKSSMAPA  300
SVSSSSIDRN NNNNDVKPHM LRDFSLEIYD RKELQFLSPS GNHHQQVTSS KPSR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083651.1	0.0	transcription factor TCP19-like
TrEMBL	A0A3Q7HTQ8	0.0	A0A3Q7HTQ8_SOLLC; Uncharacterized protein
STRING	Solyc08g080150.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13731	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-53	TCP family protein