PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04588.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 410aa    MW: 46688.5 Da    PI: 4.8
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04588.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18198247255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  Sme2.5_04588.1_g00001.1 198 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAYKLRG 247
                              59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-32197257No hitNo description
Gene3DG3DSA:3.30.730.106.3E-32198256IPR001471AP2/ERF domain
SMARTSM003804.5E-37198261IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22198256IPR016177DNA-binding domain
PROSITE profilePS5103222.8198255IPR001471AP2/ERF domain
PfamPF008476.1E-12199247IPR001471AP2/ERF domain
PRINTSPR003678.0E-11199210IPR001471AP2/ERF domain
PRINTSPR003678.0E-11221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAAPEESEKS RMAAMAEELM DFDDNTFERQ QRRPVFEEAS MSNRRFKKIK SPERQGYAQS  60
SVQQAPLNSP VPYNNPTSMA FPPPPSSSKL VFPFAYDGTQ QSMESSSQLG PNAMTLFHQQ  120
QQNQQQMISF SPQQCLYPPY FAGELGPSQN QQQFFQYWNE MNLSPRGRMM MMSRMGQESR  180
GFFRPQQVQV QPISATKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEDAALAYDR  240
EAYKLRGDNA KLNFPELFIG KDRGETSTAQ NSSPNESSLP EQNSESSIQL QPVDNEQVPP  300
LPPPQPPPED DRHDEDSGVG SSEVTTNSNS QSSELVWGDM PEDWFNAIQA GWGPGSPVWD  360
DLDTNNNLMF PPNLHFGSFC QQEPHNSDPH HHHDTNTDPS SPSFPMRPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20197255160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20197255463ATERF1
3gcc_A3e-20197255463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080739.10.0ethylene-responsive transcription factor ERF054
TrEMBLM1BKF00.0M1BKF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000472650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-45ERF family protein