PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04532.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 341aa    MW: 38347.3 Da    PI: 6.2887
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04532.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-092683032055
                              HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              +k +yps++++  LA+++gL+++q+ +WF N+R ++
  Sme2.5_04532.1_g00004.1 268 KKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 303
                              4679*****************************885 PP
2ELK41.23.4e-14223244122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK qLlrKYsgyLgsLkqEF+
  Sme2.5_04532.1_g00004.1 223 ELKGQLLRKYSGYLGSLKQEFM 244
                              9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-2086130IPR005540KNOX1
PfamPF037909.7E-2388127IPR005540KNOX1
SMARTSM012564.7E-26136187IPR005541KNOX2
PfamPF037912.5E-21140186IPR005541KNOX2
SMARTSM011882.8E-8223244IPR005539ELK domain
PfamPF037895.6E-11223244IPR005539ELK domain
PROSITE profilePS5121311.174223243IPR005539ELK domain
PROSITE profilePS5007113.054243306IPR001356Homeobox domain
SMARTSM003892.6E-13245310IPR001356Homeobox domain
SuperFamilySSF466895.99E-19245320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27248307IPR009057Homeodomain-like
CDDcd000861.49E-12255307No hitNo description
PfamPF059204.0E-16263302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGGSSGNTN TSCLMMMGYG DHDNNHTGNG NATICPPPMM MMMPPPSLTN NNNAETSSNN  60
NNILFLPFMD NTNNNNPHED HSSSSSSIKS KIMAHPHYPR LLSAYLNCQK IGAPPEVVAR  120
LEELGATSAR IGSSSGGGII GEDPALDQFM EAYCEMLTKY EQELSKPFKE AMVFLSRIEC  180
QFKALTLAPN ESALGEAMDR NGSSDEEVDV NNSLIDPQAE DRELKGQLLR KYSGYLGSLK  240
QEFMKKRKKG KLPKEARQQL LDWWNRHKKW PYPSESQKLA LAESTGLDQK QINNWFINQR  300
KRHWKPSEDI QFVVMDAAHP HYYMDNVLAN HFPMDMTPSL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238247LKQEFMKKRK
2244248KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776870.0KJ477687.1 Solanum tuberosum class I knox protein (POTH15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560169.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X2
SwissprotO222991e-174LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A2G2XFU80.0A0A2G2XFU8_CAPBA; Homeobox protein SHOOT MERISTEMLESS
STRINGPGSC0003DMT4000430831e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-126KNOX/ELK homeobox transcription factor