PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04228.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 391aa MW: 44917 Da PI: 7.5913

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04228.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	150.3	1.3e-46	115	258	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec...eaessss 80 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ aikel +++s+++ ++ +++ssss Sme2.5_04228.1_g00002.1 115 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKELSENTSQKEysdgNKIitnSNNSSSS 200 79************************************************************6666644443334322222222 PP TCP 81 sasnsssg...........kaaksaa.kskksqksaasalnlak.esrakarararertrekmrik 133 + g ++ ++ + k+k s+ + ++n++k esr+karararert+ek ++k Sme2.5_04228.1_g00002.1 201 E------GksdsfmseceeNSINEGKeKEKLSEMMQ--NNNPHKrESREKARARARERTKEKLMTK 258 2......12223567777433333333444444444..4999999***************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.3E-45	115	256	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.409	117	175	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.105	237	254	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MFPSSNNHDT FSYTSKTFLE RSYTYDHQNP SSSSRQEDNP FFLNFPSPFL DDHHHESPLS 60 QILPQSHPDQ DPSDHHVKEG IFTHLSSETS KEEMSIEDKP SSKKRNLSAT PRRRTGKKDR 120 HSKICTAQGV RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKELSENTS 180 QKEYSDGNKI ITNSNNSSSS EGKSDSFMSE CEENSINEGK EKEKLSEMMQ NNNPHKRESR 240 EKARARARER TKEKLMTKGL RKYRELYETN PNNMFDQLGS SRSNSGFLDQ DSNNNSYNTS 300 VNQERGSPHE ANSQSLEHHF AIQNYLGGAS NSSAIDSGNY FMSFLGNWEI NYAPIKSSNY 360 STTFAGNPSS IYLAQQFHPL DQEKNRHHRL E

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MFPSSNNHDT FSYTSKTFLE RSYTYDHQNP SSSSRQEDNP FFLNFPSPFL DDHHHESPLS  60
QILPQSHPDQ DPSDHHVKEG IFTHLSSETS KEEMSIEDKP SSKKRNLSAT PRRRTGKKDR  120
HSKICTAQGV RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKELSENTS  180
QKEYSDGNKI ITNSNNSSSS EGKSDSFMSE CEENSINEGK EKEKLSEMMQ NNNPHKRESR  240
EKARARARER TKEKLMTKGL RKYRELYETN PNNMFDQLGS SRSNSGFLDQ DSNNNSYNTS  300
VNQERGSPHE ANSQSLEHHF AIQNYLGGAS NSSAIDSGNY FMSFLGNWEI NYAPIKSSNY  360
STTFAGNPSS IYLAQQFHPL DQEKNRHHRL E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006366063.1	0.0	PREDICTED: transcription factor TCP12
TrEMBL	M1ABX2	0.0	M1ABX2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400019324	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-31	TCP domain protein 12