PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03980.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 319aa    MW: 36332.3 Da    PI: 6.9985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03980.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33169226259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Sme2.5_03980.1_g00003.1 169 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSYQDPSIVITTYEGQHNHH 226
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-35154228IPR003657WRKY domain
SuperFamilySSF1182901.28E-29160228IPR003657WRKY domain
PROSITE profilePS5081132.42163228IPR003657WRKY domain
SMARTSM007745.9E-39168227IPR003657WRKY domain
PfamPF031065.0E-26169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGDELRDLYY HQPFQEDSSS SMAQNIHMLD PSFMSYTSEY LHGSSSDNYI TNSLGKPFGF  60
SPPSPFCSTK DDQDIIKQDH VDANINYISN DVVGGGSETP VTPNSSISNS SSNGDHEDSN  120
KKDKQVKDES LEDGEDASKK ESKVKKKGEK KQRPPKFAFM TKSEVDHLED GYRWRKYGQK  180
AVKNSPYPRS YYRCTSQKCQ VKKRVERSYQ DPSIVITTYE GQHNHHLPAT LRGSVARMLN  240
PSMLAQPSPL MAPQATFHQE FIMSQMPQFY GHGNAFGNSP MYHQNLNHQQ QMQLPTHHHH  300
DYGLLQDMVP SMFNLKQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-271612291078Probable WRKY transcription factor 4
2lex_A1e-271612291078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-163HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065272.10.0WRKY transcription factor 71-like
TrEMBLM1AL070.0M1AL07_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000251130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-54WRKY DNA-binding protein 71