PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_03635.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 984aa MW: 110156 Da PI: 7.2508

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_03635.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.1	1.1e-08	219	272	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ Sme2.5_03635.1_g00005.1 219 GRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ 272 57888999999*************************************975444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.38E-16	830	968	IPR011009	Protein kinase-like domain
CDD	cd00180	5.42E-17	836	969	No hit	No description
Gene3D	G3DSA:1.10.510.10	7.8E-7	839	971	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MDENKGEKQH LSNSPADPHD QDSSDNTLPL QPQSVVSGAP YISSSSLYNI PGGTTAATVT 60 SVSFEQQQFE VVNPKRPRYT ASQWKFISSS SSSHQQQQPP QQQHQKAGTI LSAESSPISP 120 SAHNTNIPQA QLPTASSSDT ASSPSHSPRP SSEPSKSEGG EQVHQQFRKG KYVSPVWKPN 180 EMLWLARAWK IQYQGGGGSS SELVHLEGVA SGGGTAGGGR GKTRADKDRE VAEFLNRHGV 240 NRDAKTAGTK WDNMLGEFRK VYEWERGAER EQIGKSYFRL SPYERKIHRL PASFDEEVFE 300 ELSQFMGSRM RNPQTRIGTQ PNIGDDTRTS LIGTRSLPPP PPLREDELPI SARVKQLVMA 360 TGTETLIHGT RGGFLGFETV PSSSLDIIGG GPSSSTTSKE LRRIGKIRMI WEESVSLWGE 420 EGEHHRGRVK VQGSSFLNAD EIAFLDDSMV ACTMEAFEDG PMKGFSVDRF QSGVQLKVFG 480 RRKSSSALAP SGPNERLQLP SSEFPIRSTT PWEFQDPTEY YVGCLRSPPS TLPSLFELSW 540 HLQQPPPEEL RFPLRRDVFK DLPQGRELFF TTSTELLDCR GITYDVLTSI MRSNPSLTAA 600 TATDRDSYIG LWDDCINRII SKFCSIEMVF VRKSSSSLAE TVQDEWPNVT AFLRNFCLWR 660 GEETDQLREG QLDPSSSIVE KFLWTYMDLP YVLGYYAVGF IVTFCALSRS QDRIIRTDLY 720 TVDLSTPVER LKALVPCWRI AGLLPLLADK CFHYMSSNGS NFKHLPYTDF ERTDLGNGNF 780 VEMTPNTVVR YFSSRRKWLR IKEIYDFLDH RIPHAEFVVR ASEKDLALVF KPRGCKFKPS 840 SCDQLIEALK QVTKALVALH DLSFMHRDLG WDKVMRRIDR ENEWFITGFD EAVTAPQLYP 900 HGGAAGSGRH PPEMGRNYHG VKVDVWGIGQ LVKSCGLVGV PKLLRELQNR CLDHNPEQRP 960 TAADCYRHLL QLQSSMSAAA GGGY

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MDENKGEKQH LSNSPADPHD QDSSDNTLPL QPQSVVSGAP YISSSSLYNI PGGTTAATVT  60
SVSFEQQQFE VVNPKRPRYT ASQWKFISSS SSSHQQQQPP QQQHQKAGTI LSAESSPISP  120
SAHNTNIPQA QLPTASSSDT ASSPSHSPRP SSEPSKSEGG EQVHQQFRKG KYVSPVWKPN  180
EMLWLARAWK IQYQGGGGSS SELVHLEGVA SGGGTAGGGR GKTRADKDRE VAEFLNRHGV  240
NRDAKTAGTK WDNMLGEFRK VYEWERGAER EQIGKSYFRL SPYERKIHRL PASFDEEVFE  300
ELSQFMGSRM RNPQTRIGTQ PNIGDDTRTS LIGTRSLPPP PPLREDELPI SARVKQLVMA  360
TGTETLIHGT RGGFLGFETV PSSSLDIIGG GPSSSTTSKE LRRIGKIRMI WEESVSLWGE  420
EGEHHRGRVK VQGSSFLNAD EIAFLDDSMV ACTMEAFEDG PMKGFSVDRF QSGVQLKVFG  480
RRKSSSALAP SGPNERLQLP SSEFPIRSTT PWEFQDPTEY YVGCLRSPPS TLPSLFELSW  540
HLQQPPPEEL RFPLRRDVFK DLPQGRELFF TTSTELLDCR GITYDVLTSI MRSNPSLTAA  600
TATDRDSYIG LWDDCINRII SKFCSIEMVF VRKSSSSLAE TVQDEWPNVT AFLRNFCLWR  660
GEETDQLREG QLDPSSSIVE KFLWTYMDLP YVLGYYAVGF IVTFCALSRS QDRIIRTDLY  720
TVDLSTPVER LKALVPCWRI AGLLPLLADK CFHYMSSNGS NFKHLPYTDF ERTDLGNGNF  780
VEMTPNTVVR YFSSRRKWLR IKEIYDFLDH RIPHAEFVVR ASEKDLALVF KPRGCKFKPS  840
SCDQLIEALK QVTKALVALH DLSFMHRDLG WDKVMRRIDR ENEWFITGFD EAVTAPQLYP  900
HGGAAGSGRH PPEMGRNYHG VKVDVWGIGQ LVKSCGLVGV PKLLRELQNR CLDHNPEQRP  960
TAADCYRHLL QLQSSMSAAA GGGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158602.1	0.0	PREDICTED: uncharacterized protein LOC102589625
TrEMBL	A0A2G3CVZ1	0.0	A0A2G3CVZ1_CAPCH; Uncharacterized protein
STRING	Solyc03g006900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-08	Trihelix family protein