PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02792.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22812.2 Da    PI: 10.2089
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02792.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.3e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien+snrqvt+skRrngilKKA+E+SvLCda v+viif+s+g+++e+ss
  Sme2.5_02792.1_g00007.1  9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDAHVSVIIFASSGRMHEFSS 59
                             79***********************************************96 PP
2K-box80.92.9e-2769151183
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                              y+k +g++l++ak+e+l++e++k+kk ++n+q ++Rhl+Ged++sL+++eL+ Le++Le++l+ iR+k+ne+++++ ++ q  
  Sme2.5_02792.1_g00007.1  69 YHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIKLRHLKGEDISSLNIRELMILEEALENGLTGIRDKQNEFIRMMRKKRQLE 151
                              78999999*****************************************************************9988776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.805161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002655.83E-41278No hitNo description
SuperFamilySSF554553.66E-35294IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.2E-1680148IPR002487Transcription factor, K-box
PROSITE profilePS5129712.75982172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD AHVSVIIFAS SGRMHEFSST  60
PLVDILDQYH KLTGRRLWDA KHENLDNEIN KVKKDNDNMQ IKLRHLKGED ISSLNIRELM  120
ILEEALENGL TGIRDKQNEF IRMMRKKRQL EIASMNRNMG EIGQVFDQAR EDPEYGQMPF  180
AFRVQPMQPN LQQRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-18189183MEF2 CHIMERA
6bz1_B4e-18189183MEF2 CHIMERA
6bz1_C4e-18189183MEF2 CHIMERA
6bz1_D4e-18189183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8534170.0HQ853417.1 Iochroma cyaneum MADS box transcription factor (GLO1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083875.11e-129floral homeotic protein FBP1
SwissprotQ034161e-120GLOB_TOBAC; Floral homeotic protein GLOBOSA
TrEMBLM1ABL01e-127M1ABL0_SOLTU; Uncharacterized protein
STRINGSolyc08g067230.2.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-70MIKC_MADS family protein